Variant report

Variant	rs56366664
Chromosome Location	chr10:44734559-44734560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11594522	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11597208	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598523	0.81[AMR][1000 genomes]
rs12570720	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12571719	0.90[ASN][1000 genomes]
rs12572886	0.88[ASN][1000 genomes]
rs12572910	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12573602	0.88[ASN][1000 genomes]
rs12573610	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17155635	0.94[ASN][1000 genomes]
rs17155733	0.93[ASN][1000 genomes]
rs17389211	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17480411	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17480530	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17657853	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2224769	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3865770	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3952245	0.90[ASN][1000 genomes]
rs55769846	0.81[AMR][1000 genomes]
rs56043323	0.81[AMR][1000 genomes]
rs56284808	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083765	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7086461	0.81[AMR][1000 genomes]
rs7099184	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72788727	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72788733	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72788737	0.90[ASN][1000 genomes]
rs72788749	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72788751	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72788758	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72788791	0.81[AMR][1000 genomes]
rs736136	0.93[ASN][1000 genomes]
rs7894238	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7895640	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7897728	0.94[ASN][1000 genomes]
rs7899802	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7901938	0.94[ASN][1000 genomes]
rs7906240	0.88[ASN][1000 genomes]
rs7906368	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7913299	0.96[ASN][1000 genomes]
rs881828	0.88[ASN][1000 genomes]
rs9787462	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9787518	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44728400-44734800	Enhancers	HepG2	liver
2	chr10:44729600-44737800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44730200-44741200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:44734000-44736400	Weak transcription	Pancreas	Pancrea

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