Variant report

Variant	rs17480411
Chromosome Location	chr10:44700753-44700754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11594522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11597208	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11597731	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11598523	0.88[CEU][hapmap];0.88[CHB][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12570720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571719	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12572886	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12572910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573602	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12573610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1545844	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17155437	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17155635	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155733	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17389211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17480530	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17657853	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2224769	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3865770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3952245	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55769846	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs56043323	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs56095445	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56284808	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56366664	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58189594	0.81[AMR][1000 genomes]
rs6593403	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6593404	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7068801	0.89[EUR][1000 genomes]
rs7069262	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7083765	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7086461	0.84[AMR][1000 genomes]
rs7098818	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7099184	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72788727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72788733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72788737	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72788749	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72788751	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72788758	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72788791	0.84[AMR][1000 genomes]
rs736136	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7894238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7895640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7896736	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7897728	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899802	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7900182	0.95[EUR][1000 genomes]
rs7901938	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906240	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7906368	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7913299	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs881828	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9787462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9787518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44691400-44701200	Weak transcription	Fetal Heart	heart
2	chr10:44691600-44705200	Weak transcription	Right Atrium	heart
3	chr10:44698400-44701800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:44698800-44701800	Weak transcription	HepG2	liver
5	chr10:44700000-44700800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:44700000-44701200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr10:44700000-44701200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr10:44700200-44703000	Enhancers	Fetal Muscle Leg	muscle
9	chr10:44700400-44701000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:44700400-44701200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:44700400-44701800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:44700600-44700800	Bivalent Enhancer	Osteobl	bone
13	chr10:44700600-44701000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr10:44700600-44701000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:44700600-44701000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr10:44700600-44701200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:44700600-44701200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:44700600-44701400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr10:44700600-44701800	Enhancers	Fetal Lung	lung
20	chr10:44700600-44702400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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