Variant report

Variant	rs6593404
Chromosome Location	chr10:44689406-44689407
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44689310..44690941-chr10:44794832..44796447,2	MCF-7	breast:
2	chr10:44678734..44680302-chr10:44689215..44691218,2	MCF-7	breast:
3	chr10:44671351..44672873-chr10:44688913..44691046,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11594522	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11597208	0.83[AMR][1000 genomes]
rs12570720	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12571719	0.81[EUR][1000 genomes]
rs12572886	0.83[EUR][1000 genomes]
rs12572910	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12573602	0.81[EUR][1000 genomes]
rs12573610	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1545844	1.00[ASN][1000 genomes]
rs17155437	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17155635	0.86[EUR][1000 genomes]
rs17389211	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17480411	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17480530	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2224769	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3865770	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3952245	0.81[EUR][1000 genomes]
rs56095445	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56284808	0.83[AMR][1000 genomes]
rs6593403	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069262	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098818	1.00[ASN][1000 genomes]
rs72788727	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72788733	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72788737	0.81[EUR][1000 genomes]
rs72788749	0.83[AMR][1000 genomes]
rs72788751	0.83[AMR][1000 genomes]
rs7894238	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7895640	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7896736	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7897728	0.85[EUR][1000 genomes]
rs7900182	0.82[EUR][1000 genomes]
rs7901938	0.86[EUR][1000 genomes]
rs881828	0.81[EUR][1000 genomes]
rs9787462	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9787518	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44676400-44690600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:44686800-44692000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:44687000-44692000	Enhancers	Colon Smooth Muscle	Colon
4	chr10:44687200-44690400	Weak transcription	HSMM	muscle
5	chr10:44687400-44690400	Enhancers	HepG2	liver
6	chr10:44688000-44690200	Enhancers	Fetal Muscle Trunk	muscle
7	chr10:44688000-44700600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:44688400-44689800	Enhancers	Fetal Muscle Leg	muscle
9	chr10:44688400-44690600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:44688800-44690600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:44688800-44692000	Enhancers	NHDF-Ad	bronchial
12	chr10:44689000-44690400	Weak transcription	HSMMtube	muscle
13	chr10:44689000-44690600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:44689000-44691600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:44689200-44690600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:44689200-44700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:44689400-44689600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:44689400-44691600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:44689400-44692000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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