Variant report

Variant	rs7896736
Chromosome Location	chr10:44675510-44675511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44666585..44670486-chr10:44673567..44676746,4	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11594522	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11597208	0.88[AMR][1000 genomes]
rs11597731	0.81[EUR][1000 genomes]
rs12570720	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12571719	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12572886	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12572910	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12573602	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12573610	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1545844	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17155635	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17389211	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17480411	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17480530	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17657853	0.84[AMR][1000 genomes]
rs2224769	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3865770	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3952245	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56095445	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56284808	0.88[AMR][1000 genomes]
rs6593403	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593404	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7069262	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083765	0.81[AMR][1000 genomes]
rs7098818	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099184	0.81[AMR][1000 genomes]
rs72788727	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72788733	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72788737	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72788749	0.88[AMR][1000 genomes]
rs72788751	0.88[AMR][1000 genomes]
rs72788758	0.84[AMR][1000 genomes]
rs7894238	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7895640	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7897728	0.87[EUR][1000 genomes]
rs7899802	0.83[AMR][1000 genomes]
rs7900182	0.84[EUR][1000 genomes]
rs7901938	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7906240	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs881828	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9787462	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9787518	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44667400-44675800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44668600-44679600	Weak transcription	Left Ventricle	heart
3	chr10:44670400-44675600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:44670400-44682400	Weak transcription	Pancreas	Pancrea
5	chr10:44672000-44675600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:44674600-44677400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:44674800-44676400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:44674800-44676400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:44675000-44676000	Enhancers	NHLF	lung
10	chr10:44675000-44676200	Enhancers	HSMM	muscle
11	chr10:44675200-44676600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:44675200-44677200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:44675200-44677200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr10:44675400-44675600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:44675400-44675800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr10:44675400-44675800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr10:44675400-44675800	Flanking Active TSS	HSMMtube	muscle
18	chr10:44675400-44676000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
19	chr10:44675400-44676000	Enhancers	Fetal Muscle Trunk	muscle
20	chr10:44675400-44676000	Enhancers	HepG2	liver
21	chr10:44675400-44676000	Enhancers	Osteobl	bone
22	chr10:44675400-44676200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:44675400-44676200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:44675400-44676200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:44675400-44676200	Enhancers	Fetal Muscle Leg	muscle
26	chr10:44675400-44676400	Flanking Active TSS	NHDF-Ad	bronchial
27	chr10:44675400-44676600	Enhancers	NH-A	brain
28	chr10:44675400-44676800	Enhancers	Colon Smooth Muscle	Colon
29	chr10:44675400-44677000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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