Variant report

Variant	rs11597731
Chromosome Location	chr10:44694201-44694202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10900007	0.81[EUR][1000 genomes]
rs11594522	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11597208	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11598523	0.87[CEU][hapmap]
rs12570720	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12571719	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12572886	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12572910	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12573602	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12573610	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1545844	0.80[EUR][1000 genomes]
rs17155635	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17155733	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17389211	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17480411	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17480530	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17657853	0.80[EUR][1000 genomes]
rs2224769	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3865770	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3952245	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56284808	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6593403	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7068801	0.95[EUR][1000 genomes]
rs7069262	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7098818	0.81[EUR][1000 genomes]
rs72788727	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72788733	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72788737	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72788749	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72788751	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72788758	0.81[EUR][1000 genomes]
rs736136	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7894238	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7895640	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7896736	0.81[EUR][1000 genomes]
rs7897728	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7899802	0.81[EUR][1000 genomes]
rs7900182	0.88[EUR][1000 genomes]
rs7901938	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7906240	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7906368	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7913299	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs881828	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9787462	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9787518	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44688000-44700600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44689200-44700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:44691400-44701200	Weak transcription	Fetal Heart	heart
4	chr10:44691600-44694800	Weak transcription	Right Ventricle	heart
5	chr10:44691600-44705200	Weak transcription	Right Atrium	heart
6	chr10:44691800-44694400	Weak transcription	Left Ventricle	heart
7	chr10:44692000-44694400	Weak transcription	Stomach Mucosa	stomach
8	chr10:44693000-44694400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:44693000-44694800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:44693000-44694800	Enhancers	Ovary	ovary
11	chr10:44693200-44694600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:44693200-44694800	Enhancers	Adipose Nuclei	Adipose
13	chr10:44693200-44694800	Enhancers	HSMM	muscle
14	chr10:44693200-44695000	Enhancers	Fetal Muscle Leg	muscle
15	chr10:44693400-44694600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:44693400-44694600	Enhancers	Fetal Muscle Trunk	muscle
17	chr10:44693400-44694600	Enhancers	NHDF-Ad	bronchial
18	chr10:44693400-44694800	Enhancers	Fetal Stomach	stomach
19	chr10:44693400-44695000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr10:44693400-44695400	Enhancers	HepG2	liver
21	chr10:44693600-44694800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:44693600-44694800	Enhancers	HSMMtube	muscle
23	chr10:44693800-44694600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:44693800-44694600	Enhancers	NHLF	lung
25	chr10:44693800-44695000	Enhancers	Colon Smooth Muscle	Colon
26	chr10:44694000-44694600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:44694000-44695200	Enhancers	Stomach Smooth Muscle	stomach
28	chr10:44694200-44694600	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links