Variant report

Variant	rs7068801
Chromosome Location	chr10:44696978-44696979
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10900007	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11594522	0.89[EUR][1000 genomes]
rs11597731	0.95[EUR][1000 genomes]
rs12570720	0.89[EUR][1000 genomes]
rs12571719	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12572886	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12572910	0.89[EUR][1000 genomes]
rs12573602	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12573610	0.89[EUR][1000 genomes]
rs17155635	0.89[EUR][1000 genomes]
rs17155733	0.82[EUR][1000 genomes]
rs17389211	0.89[EUR][1000 genomes]
rs17480411	0.89[EUR][1000 genomes]
rs17480530	0.89[EUR][1000 genomes]
rs2224769	0.88[EUR][1000 genomes]
rs3865770	0.89[EUR][1000 genomes]
rs3952245	0.94[EUR][1000 genomes]
rs58575067	0.88[ASN][1000 genomes]
rs6593403	0.86[EUR][1000 genomes]
rs7069262	0.87[EUR][1000 genomes]
rs72788727	0.89[EUR][1000 genomes]
rs72788733	0.89[EUR][1000 genomes]
rs72788737	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs736136	0.82[EUR][1000 genomes]
rs7894238	0.89[EUR][1000 genomes]
rs7895640	0.89[EUR][1000 genomes]
rs7897728	0.88[EUR][1000 genomes]
rs7900182	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7901938	0.89[EUR][1000 genomes]
rs7906240	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7906368	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7907961	0.88[ASN][1000 genomes]
rs7913299	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7918527	0.88[ASN][1000 genomes]
rs881828	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9787462	0.89[EUR][1000 genomes]
rs9787518	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44688000-44700600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44689200-44700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:44691400-44701200	Weak transcription	Fetal Heart	heart
4	chr10:44691600-44705200	Weak transcription	Right Atrium	heart
5	chr10:44694600-44697800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:44694800-44700400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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