Variant report

Variant	rs7098818
Chromosome Location	chr10:44680487-44680488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11594522	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11597208	0.83[AMR][1000 genomes]
rs11597731	0.81[EUR][1000 genomes]
rs11598523	0.82[CEU][hapmap]
rs12570720	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12571719	0.82[EUR][1000 genomes]
rs12572886	0.83[EUR][1000 genomes]
rs12572910	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12573602	0.82[EUR][1000 genomes]
rs12573610	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1545844	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155437	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17155635	0.86[EUR][1000 genomes]
rs17389211	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17480411	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17480530	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2224769	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3865770	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3952245	0.82[EUR][1000 genomes]
rs56095445	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56284808	0.83[AMR][1000 genomes]
rs6593403	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593404	1.00[ASN][1000 genomes]
rs7069262	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72788727	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72788733	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72788737	0.82[EUR][1000 genomes]
rs72788749	0.83[AMR][1000 genomes]
rs72788751	0.83[AMR][1000 genomes]
rs7894238	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7895640	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7896736	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897728	0.86[EUR][1000 genomes]
rs7900182	0.82[EUR][1000 genomes]
rs7901938	0.86[EUR][1000 genomes]
rs7906240	0.80[EUR][1000 genomes]
rs881828	0.82[EUR][1000 genomes]
rs9787462	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9787518	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44670400-44682400	Weak transcription	Pancreas	Pancrea
2	chr10:44676000-44688400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:44676200-44681800	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:44676400-44690600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:44677200-44681600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:44678000-44680800	Enhancers	NHDF-Ad	bronchial
7	chr10:44678400-44682800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:44678600-44682600	Enhancers	Fetal Lung	lung
9	chr10:44679200-44680800	Weak transcription	Right Atrium	heart
10	chr10:44679600-44680600	Enhancers	Left Ventricle	heart
11	chr10:44679600-44681400	Weak transcription	Adipose Nuclei	Adipose
12	chr10:44679800-44681000	Enhancers	Fetal Heart	heart
13	chr10:44679800-44681800	Weak transcription	Fetal Stomach	stomach
14	chr10:44680000-44681400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:44680200-44680800	Enhancers	Right Ventricle	heart
16	chr10:44680200-44683000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:44680400-44680600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:44680400-44680600	Bivalent Enhancer	NHLF	lung
19	chr10:44680400-44681800	Weak transcription	Ovary	ovary
20	chr10:44680400-44687000	Weak transcription	Colon Smooth Muscle	Colon

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