Variant report

Variant	rs56369925
Chromosome Location	chr5:124369435-124369436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55699975	1.00[ASN][1000 genomes]
rs55933200	1.00[ASN][1000 genomes]
rs56752946	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58473632	1.00[ASN][1000 genomes]
rs59435469	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59593611	1.00[ASN][1000 genomes]
rs61267266	1.00[ASN][1000 genomes]
rs62372837	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595570	1.00[ASN][1000 genomes]
rs6872503	1.00[ASN][1000 genomes]
rs6876152	1.00[ASN][1000 genomes]
rs6888980	1.00[ASN][1000 genomes]
rs6894808	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728857	1.00[ASN][1000 genomes]
rs7729016	1.00[ASN][1000 genomes]
rs9327348	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124363400-124377600	Weak transcription	Fetal Kidney	kidney
2	chr5:124363600-124370000	Weak transcription	Stomach Mucosa	stomach
3	chr5:124365400-124379400	Weak transcription	Pancreas	Pancrea
4	chr5:124365800-124369600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:124368200-124369800	Weak transcription	NHDF-Ad	bronchial
6	chr5:124368400-124370800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:124368600-124371000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:124368800-124370800	Enhancers	Dnd41	blood
9	chr5:124369000-124371600	Weak transcription	Adipose Nuclei	Adipose
10	chr5:124369200-124370000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:124369400-124369600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:124369400-124369800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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