Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr5:124367984-124368405	A549	lung:	n/a	n/a
2	STAT3	chr5:124368016-124368361	MCF10A-Er-Src	breast:	n/a	chr5:124368194-124368202
3	FOS	chr5:124368127-124368361	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr5:124368166-124368362	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr5:124368231-124368334	MCF10A-Er-Src	breast:	n/a	n/a
6	JUND	chr5:124367956-124368628	SK-N-SH	brain:	n/a	chr5:124368267-124368278
7	JUND	chr5:124368142-124368433	HepG2	liver:	n/a	chr5:124368267-124368278
8	FOS	chr5:124368162-124368401	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000250411	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs28398972	0.86[EUR][1000 genomes]
rs34572370	0.84[EUR][1000 genomes]
rs55699975	0.89[ASN][1000 genomes]
rs55933200	0.89[ASN][1000 genomes]
rs56369925	0.89[ASN][1000 genomes]
rs56752946	0.89[ASN][1000 genomes]
rs58473632	0.89[ASN][1000 genomes]
rs59435469	0.89[ASN][1000 genomes]
rs59593611	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61267266	0.89[ASN][1000 genomes]
rs62372837	0.89[ASN][1000 genomes]
rs6595570	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6869617	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6872503	0.89[ASN][1000 genomes]
rs6876152	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6888980	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6894808	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7728857	0.89[ASN][1000 genomes]
rs7729016	0.89[ASN][1000 genomes]
rs9327347	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124363400-124377600	Weak transcription	Fetal Kidney	kidney
2	chr5:124363600-124370000	Weak transcription	Stomach Mucosa	stomach
3	chr5:124365400-124379400	Weak transcription	Pancreas	Pancrea
4	chr5:124365800-124369600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:124367000-124369000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:124367600-124369000	Enhancers	Adipose Nuclei	Adipose
7	chr5:124367800-124368600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:124367800-124368600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:124367800-124368800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:124367800-124368800	Enhancers	HSMMtube	muscle
11	chr5:124367800-124369000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:124368000-124368400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr5:124368200-124368400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:124368200-124369800	Weak transcription	NHDF-Ad	bronchial

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