Variant report

Variant	rs56371872
Chromosome Location	chr4:74298628-74298629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr4:74297724-74299044	HepG2	liver:	n/a	n/a
2	FOXA1	chr4:74297610-74299184	HepG2	liver:	n/a	chr4:74298054-74298066
3	MXI1	chr4:74297922-74298714	HepG2	liver:	n/a	n/a
4	TBP	chr4:74297820-74298708	HepG2	liver:	n/a	n/a
5	NR2F2	chr4:74297700-74298871	HepG2	liver:	n/a	n/a
6	CEBPB	chr4:74298204-74298704	HepG2	liver:	n/a	n/a
7	JUND	chr4:74298298-74298692	HepG2	liver:	n/a	n/a
8	FOXA1	chr4:74297649-74298914	HepG2	liver:	n/a	chr4:74298054-74298066
9	FOXA1	chr4:74297719-74298702	HepG2	liver:	n/a	chr4:74298054-74298066
10	TEAD4	chr4:74297460-74299532	HepG2	liver:	n/a	n/a
11	NR2F2	chr4:74297658-74299279	HepG2	liver:	n/a	n/a
12	CEBPB	chr4:74297849-74298750	HepG2	liver:	n/a	n/a
13	HNF4A	chr4:74297803-74298747	HepG2	liver:	n/a	chr4:74298001-74298016 chr4:74298002-74298016 chr4:74298001-74298016 chr4:74298020-74298035 chr4:74298003-74298015
14	HNF4A	chr4:74297862-74298658	HepG2	liver:	n/a	chr4:74298001-74298016 chr4:74298002-74298016 chr4:74298001-74298016 chr4:74298020-74298035 chr4:74298003-74298015
15	JUND	chr4:74297790-74298711	HepG2	liver:	n/a	n/a
16	FOXA1	chr4:74297684-74298797	HepG2	liver:	n/a	chr4:74298054-74298066
17	CEBPB	chr4:74298484-74298711	K562	blood:	n/a	n/a
18	FOXA2	chr4:74297750-74299191	HepG2	liver:	n/a	chr4:74298054-74298066
19	TCF7L2	chr4:74297750-74298899	HepG2	liver:	n/a	n/a
20	POLR2A	chr4:74297826-74298735	HepG2	liver:	n/a	n/a
21	EP300	chr4:74297680-74299300	HepG2	liver:	n/a	chr4:74297977-74297985
22	CEBPB	chr4:74298479-74298742	HepG2	liver:	n/a	n/a
23	JUN	chr4:74297462-74298758	HepG2	liver:	n/a	n/a
24	GATA1	chr4:74297904-74299441	K562	blood:	n/a	chr4:74298144-74298155
25	HDAC2	chr4:74297718-74298797	HepG2	liver:	n/a	n/a
26	FOXA2	chr4:74297237-74299126	HepG2	liver:	n/a	chr4:74298054-74298066
27	EP300	chr4:74297652-74298881	HepG2	liver:	n/a	chr4:74297977-74297985
28	HDAC2	chr4:74297831-74298817	HepG2	liver:	n/a	n/a
29	HNF4G	chr4:74297793-74298752	HepG2	liver:	n/a	chr4:74298002-74298016 chr4:74298001-74298016 chr4:74298003-74298015
30	SP1	chr4:74297780-74298866	HepG2	liver:	n/a	n/a
31	MAX	chr4:74297751-74298794	HepG2	liver:	n/a	n/a
32	MAFK	chr4:74297869-74298717	HepG2	liver:	n/a	n/a
33	CEBPB	chr4:74297832-74298800	HepG2	liver:	n/a	n/a
34	NFIC	chr4:74297391-74299267	HepG2	liver:	n/a	n/a
35	EP300	chr4:74297776-74298728	HepG2	liver:	n/a	chr4:74297977-74297985
36	NFIC	chr4:74297754-74298819	HepG2	liver:	n/a	n/a
37	POLR2A	chr4:74297845-74298630	HepG2	liver:	n/a	n/a
38	POLR2A	chr4:74297741-74299266	HepG2	liver:	n/a	n/a
39	FOSL2	chr4:74297836-74298684	HepG2	liver:	n/a	n/a
40	MBD4	chr4:74297739-74299234	HepG2	liver:	n/a	n/a
41	MYBL2	chr4:74297455-74299138	HepG2	liver:	n/a	n/a
42	MAFK	chr4:74297825-74298702	HepG2	liver:	n/a	n/a
43	RXRA	chr4:74297853-74298725	HepG2	liver:	n/a	n/a
44	ARID3A	chr4:74297275-74299086	HepG2	liver:	n/a	n/a
45	MBD4	chr4:74297663-74299109	HepG2	liver:	n/a	n/a
46	MAFF	chr4:74297917-74298713	HepG2	liver:	n/a	n/a
47	MYBL2	chr4:74297712-74298873	HepG2	liver:	n/a	n/a
48	HEY1	chr4:74297793-74298734	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74297053..74298875-chr4:74302226..74304748,2	K562	blood:

Variant related genes	Relation type
AFP	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55772354	1.00[AFR][1000 genomes]
rs72647032	1.00[AFR][1000 genomes]
rs72647036	1.00[AFR][1000 genomes]
rs72647039	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74296600-74299800	Enhancers	Fetal Intestine Small	intestine
2	chr4:74296800-74299200	Enhancers	Fetal Intestine Large	intestine
3	chr4:74298000-74299600	Enhancers	K562	blood
4	chr4:74298200-74298800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:74298200-74299000	Enhancers	Fetal Lung	lung
6	chr4:74298200-74299600	Enhancers	Gastric	stomach
7	chr4:74298200-74299600	Enhancers	Pancreas	Pancrea
8	chr4:74298200-74299600	Enhancers	Stomach Mucosa	stomach
9	chr4:74298400-74298800	Enhancers	HepG2	liver
10	chr4:74298600-74300400	Enhancers	Liver	Liver
11	chr4:74298600-74310800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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