Variant report

Variant	rs72647036
Chromosome Location	chr4:74318500-74318501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:74315683-74319740	HepG2	liver:	n/a	n/a
2	HEY1	chr4:74315680-74319733	HepG2	liver:	n/a	n/a
3	POLR2A	chr4:74315750-74319715	HepG2	liver:	n/a	n/a
4	NR2F2	chr4:74317816-74318697	HepG2	liver:	n/a	n/a
5	POLR2A	chr4:74318072-74318546	HepG2	liver:	n/a	n/a
6	POLR2A	chr4:74315844-74319677	HepG2	liver:	n/a	n/a
7	POLR2A	chr4:74315741-74319722	HepG2	liver:	n/a	n/a
8	HEY1	chr4:74317111-74319649	HepG2	liver:	n/a	n/a
9	MYBL2	chr4:74317123-74319791	HepG2	liver:	n/a	n/a
10	MBD4	chr4:74312922-74319740	HepG2	liver:	n/a	n/a
11	TEAD4	chr4:74315825-74319787	HepG2	liver:	n/a	n/a
12	POLR2A	chr4:74317097-74319678	HepG2	liver:	n/a	n/a
13	MBD4	chr4:74307189-74325400	HepG2	liver:	n/a	n/a
14	POLR2A	chr4:74307214-74325260	HepG2	liver:	n/a	n/a
15	POLR2A	chr4:74315798-74319711	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
AFP	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55772354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56371872	1.00[AFR][1000 genomes]
rs72647032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72647039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72663044	0.80[EUR][1000 genomes]
rs72663045	0.80[EUR][1000 genomes]
rs72663047	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74315200-74319600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr4:74315400-74319600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:74315400-74320200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:74316000-74318600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:74316000-74319000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:74316000-74319400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr4:74316400-74319600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:74316600-74318800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:74316800-74319000	Weak transcription	Ovary	ovary
10	chr4:74316800-74319000	Weak transcription	Pancreas	Pancrea
11	chr4:74316800-74319000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr4:74316800-74319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:74317200-74319200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:74317200-74319400	Enhancers	Small Intestine	intestine
15	chr4:74317200-74319800	Enhancers	Fetal Intestine Large	intestine
16	chr4:74317400-74318800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:74317400-74319000	Weak transcription	NHLF	lung
18	chr4:74317600-74318600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:74317600-74318800	Weak transcription	Liver	Liver
20	chr4:74317600-74321400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr4:74317800-74319000	Weak transcription	NH-A	brain
22	chr4:74318000-74318600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr4:74318000-74318600	Enhancers	Fetal Muscle Leg	muscle
24	chr4:74318000-74319600	Enhancers	H9 Cell Line	embryonic stem cell
25	chr4:74318000-74320800	Enhancers	Fetal Intestine Small	intestine
26	chr4:74318200-74318600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:74318200-74319400	Genic enhancers	HepG2	liver
28	chr4:74318200-74319600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr4:74318200-74319600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:74318200-74319600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr4:74318200-74319600	Enhancers	Duodenum Mucosa	Duodenum
32	chr4:74318400-74318800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr4:74318400-74319400	Enhancers	K562	blood
34	chr4:74318400-74319600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr4:74318400-74319600	Enhancers	Colonic Mucosa	Colon
36	chr4:74318400-74319600	Enhancers	NHEK	skin

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