Variant report

Variant	rs72663047
Chromosome Location	chr4:74179342-74179343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17794456	0.80[EUR][1000 genomes]
rs55772354	0.93[EUR][1000 genomes]
rs72647032	0.93[EUR][1000 genomes]
rs72647036	0.80[EUR][1000 genomes]
rs72647039	0.80[EUR][1000 genomes]
rs72663003	0.80[EUR][1000 genomes]
rs72663044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72663045	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74177200-74180000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:74177200-74180400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:74177400-74180000	Weak transcription	NHDF-Ad	bronchial
4	chr4:74177600-74180200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:74178000-74180800	Weak transcription	Liver	Liver
6	chr4:74179200-74181000	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links