Variant report

Variant	rs56372060
Chromosome Location	chr4:20327968-20327969
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs4351015	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6819491	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6828150	0.86[ASN][1000 genomes]
rs6836592	0.82[ASN][1000 genomes]
rs6842624	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6846187	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6851454	0.86[ASN][1000 genomes]
rs73238754	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73238758	0.86[ASN][1000 genomes]
rs73238759	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73238762	0.86[ASN][1000 genomes]
rs73238764	0.82[ASN][1000 genomes]
rs73238766	0.86[ASN][1000 genomes]
rs73238770	0.81[EUR][1000 genomes]
rs73238771	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7657242	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7661464	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7672013	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7672504	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7677207	0.86[ASN][1000 genomes]
rs7682567	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv593793	chr4:20282334-20333722	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878740	chr4:20292239-20333722	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20315600-20328000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:20320200-20334000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:20322400-20328000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:20322400-20328000	Weak transcription	NHLF	lung
5	chr4:20323200-20334800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:20323400-20334800	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:20323600-20328200	Weak transcription	Fetal Lung	lung
8	chr4:20323600-20334000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:20323800-20335000	Weak transcription	Brain Substantia Nigra	brain
10	chr4:20326000-20338800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:20327400-20328200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:20327400-20329600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:20327600-20328200	Enhancers	Brain Anterior Caudate	brain
14	chr4:20327600-20328400	Enhancers	Colon Smooth Muscle	Colon
15	chr4:20327600-20329000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:20327600-20329000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:20327800-20328400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr4:20327800-20328800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:20327800-20329200	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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