Variant report

Variant	rs7672013
Chromosome Location	chr4:20352918-20352919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10008965	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10011395	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10015700	0.87[EUR][1000 genomes]
rs10021499	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10516355	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1473080	0.82[EUR][1000 genomes]
rs17537654	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17538221	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17538270	0.82[EUR][1000 genomes]
rs17609639	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17609702	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17609982	0.85[EUR][1000 genomes]
rs17610209	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28398193	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28420307	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28437738	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28544425	0.83[EUR][1000 genomes]
rs28579259	0.85[EUR][1000 genomes]
rs4351015	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4563491	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4585301	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56264247	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56372060	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6447960	0.85[EUR][1000 genomes]
rs6447962	0.85[EUR][1000 genomes]
rs6813778	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6819491	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6828150	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6834573	0.82[EUR][1000 genomes]
rs6836592	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6842624	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6846187	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6851454	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73238754	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73238758	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73238759	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73238762	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73238764	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73238766	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73238770	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73238771	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73238778	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73238780	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73238783	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73238788	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73238789	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73238790	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73250384	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7657242	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7661464	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7665829	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7672504	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7677207	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7682567	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9291409	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9993284	0.84[EUR][1000 genomes]
rs9996157	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9996985	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20339200-20353000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:20343400-20355400	Weak transcription	Fetal Lung	lung
3	chr4:20347800-20353400	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:20348600-20354400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:20349200-20353200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:20350600-20353000	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:20350600-20358400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:20350800-20353200	Weak transcription	Brain Anterior Caudate	brain
9	chr4:20350800-20353200	Weak transcription	Brain Substantia Nigra	brain
10	chr4:20350800-20353200	Weak transcription	NHDF-Ad	bronchial
11	chr4:20352800-20353400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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