Variant report

Variant	rs56372834
Chromosome Location	chr12:118923322-118923323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55801852	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55933871	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56187040	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56275031	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56332125	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56360417	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56400137	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56402717	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56414020	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58067046	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58928688	0.85[EUR][1000 genomes]
rs59930917	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61068630	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61944719	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61944720	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61944723	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61944729	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61944730	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61944737	1.00[ASN][1000 genomes]
rs61944738	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv899548	chr12:118909907-118987597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3342304	chr12:118916281-118944811	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118917600-118924200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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