Variant report

Variant	rs61944738
Chromosome Location	chr12:118935805-118935806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56372834	1.00[ASN][1000 genomes]
rs61944737	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv899548	chr12:118909907-118987597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3342304	chr12:118916281-118944811	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118935000-118936600	Enhancers	Placenta	Placenta
2	chr12:118935000-118936600	Enhancers	Stomach Mucosa	stomach
3	chr12:118935200-118936400	Enhancers	Right Ventricle	heart
4	chr12:118935600-118936400	Enhancers	Left Ventricle	heart
5	chr12:118935600-118936600	Enhancers	Right Atrium	heart
6	chr12:118935600-118936800	Enhancers	Stomach Smooth Muscle	stomach
7	chr12:118935800-118936200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:118935800-118936200	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:118935800-118936400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr12:118935800-118936400	Enhancers	Pancreas	Pancrea
11	chr12:118935800-118936600	Enhancers	Colon Smooth Muscle	Colon
12	chr12:118935800-118936600	Enhancers	Fetal Heart	heart
13	chr12:118935800-118936600	Enhancers	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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