Variant report

Variant	rs56374406
Chromosome Location	chr8:122473711-122473712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55779756	1.00[AMR][1000 genomes]
rs56263906	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56283702	1.00[AMR][1000 genomes]
rs57011159	1.00[AMR][1000 genomes]
rs58114067	1.00[AMR][1000 genomes]
rs58685682	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59511333	1.00[AMR][1000 genomes]
rs59752843	1.00[AMR][1000 genomes]
rs60444732	1.00[AMR][1000 genomes]
rs73328429	1.00[AMR][1000 genomes]
rs73328443	1.00[AMR][1000 genomes]
rs73330208	1.00[AMR][1000 genomes]
rs73330237	1.00[AMR][1000 genomes]
rs73330261	1.00[AMR][1000 genomes]
rs73330264	1.00[AMR][1000 genomes]
rs73332330	1.00[AMR][1000 genomes]
rs73332337	1.00[AMR][1000 genomes]
rs73332341	1.00[AMR][1000 genomes]
rs73332347	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73332353	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709847	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831445	chr8:122336877-122509300	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1033501	chr8:122436332-122758651	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv3347461	chr8:122473649-122473978	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122467200-122481600	Weak transcription	NHLF	lung
2	chr8:122468600-122487600	Weak transcription	Fetal Kidney	kidney
3	chr8:122472600-122474200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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