Variant report

Variant	rs59752843
Chromosome Location	chr8:122419580-122419581
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122415498..122417077-chr8:122417870..122419927,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55779756	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56263906	1.00[AMR][1000 genomes]
rs56283702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56374406	1.00[AMR][1000 genomes]
rs57011159	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58114067	1.00[AMR][1000 genomes]
rs58685682	1.00[AMR][1000 genomes]
rs59511333	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60444732	1.00[AMR][1000 genomes]
rs73328429	1.00[AMR][1000 genomes]
rs73328443	1.00[AMR][1000 genomes]
rs73330208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73330237	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73330261	1.00[AMR][1000 genomes]
rs73330264	1.00[AMR][1000 genomes]
rs73332330	1.00[AMR][1000 genomes]
rs73332337	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73332341	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73332347	1.00[AMR][1000 genomes]
rs73332353	1.00[AMR][1000 genomes]
rs73709847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831445	chr8:122336877-122509300	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2755780	chr8:122393819-122426819	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1027842	chr8:122394235-122427343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv10312	chr8:122400708-122430090	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1018781	chr8:122403995-122438697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1029597	chr8:122403995-122440174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2761213	chr8:122404007-122427355	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2421507	chr8:122404007-122429586	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv520758	chr8:122405097-122427672	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3693008	chr8:122405097-122429586	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv465793	chr8:122405097-122452320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv612132	chr8:122405097-122452320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv442121	chr8:122405182-122427355	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv515062	chr8:122405435-122422419	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv1847136	chr8:122411349-122445322	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv891427	chr8:122411349-122472297	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122415600-122420800	Enhancers	NHDF-Ad	bronchial
2	chr8:122417000-122420800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:122417200-122420800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:122417400-122419600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr8:122417400-122419600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr8:122417400-122419600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:122417600-122421000	Enhancers	NHLF	lung
8	chr8:122417800-122419600	Enhancers	HSMM	muscle
9	chr8:122417800-122419600	Enhancers	HSMMtube	muscle
10	chr8:122417800-122420200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:122418000-122419600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:122418000-122419600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:122418000-122419600	Enhancers	Fetal Stomach	stomach
14	chr8:122418000-122420000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:122418600-122419600	Enhancers	Adipose Nuclei	Adipose
16	chr8:122418600-122419600	Enhancers	Hela-S3	cervix
17	chr8:122419000-122419800	Flanking Active TSS	Osteobl	bone
18	chr8:122419400-122419600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr8:122419400-122419600	Flanking Active TSS	NH-A	brain
20	chr8:122419400-122419800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:122419400-122419800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr8:122419400-122420000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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