Variant report

Variant	rs563758077
Chromosome Location	chr15:44138448-44138449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758379	chr15:43823158-44148641	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	esv2760028	chr15:43823158-44148641	Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv427960	chr15:43823158-44148641	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
4	nsv1037786	chr15:43888926-44318587	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv542370	chr15:43888926-44318587	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
6	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
7	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
8	nsv1036318	chr15:44053617-44160773	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
9	nsv1050263	chr15:44093927-44204047	Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	n/a
10	nsv511550	chr15:44120559-44148142	Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
11	nsv569254	chr15:44134922-44138492	Strong transcription Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
12	nsv569255	chr15:44134966-44138492	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
13	esv3311744	chr15:44135360-44140858	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv569258	chr15:44135888-44138492	Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv9255	chr15:44136152-44141626	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3447307	chr15:44136310-44140108	Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv14304	chr15:44136482-44138796	Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3311745	chr15:44136688-44139173	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv3311747	chr15:44136867-44138963	Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
20	nsv512394	chr15:44136873-44139682	Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv3311743	chr15:44136929-44138924	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv3311748	chr15:44136981-44138926	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv3311746	chr15:44137044-44138857	Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv3311749	chr15:44137058-44138856	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
25	nsv819016	chr15:44137203-44138886	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
26	esv11576	chr15:44137459-44138796	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	n/a
27	nsv820434	chr15:44137459-44138845	Strong transcription Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
28	nsv569265	chr15:44137651-44138492	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	n/a
29	nsv569270	chr15:44137702-44138492	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	n/a
30	nsv569276	chr15:44137753-44138492	Strong transcription Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
31	nsv569277	chr15:44137753-44147265	Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	n/a
32	nsv569281	chr15:44137754-44138492	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	n/a
33	nsv569287	chr15:44137807-44138492	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	n/a
34	nsv569292	chr15:44137858-44138492	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	n/a
35	nsv569295	chr15:44138052-44138492	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
36	nsv569297	chr15:44138103-44138492	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44117400-44150200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:44119600-44142000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:44119600-44143200	Weak transcription	Aorta	Aorta
4	chr15:44119600-44143400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:44119600-44150600	Weak transcription	Esophagus	oesophagus
6	chr15:44119600-44151000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:44119600-44156400	Weak transcription	Pancreas	Pancrea
8	chr15:44119600-44166000	Weak transcription	Spleen	Spleen
9	chr15:44119600-44169400	Weak transcription	Fetal Intestine Large	intestine
10	chr15:44119600-44172800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:44119600-44181800	Weak transcription	Small Intestine	intestine
12	chr15:44119600-44183200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:44119800-44144400	Weak transcription	Right Ventricle	heart
14	chr15:44119800-44166400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr15:44120200-44150800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:44120400-44143000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr15:44120600-44140200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr15:44120600-44143200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr15:44120600-44143200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr15:44120600-44149200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr15:44120600-44150800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:44120600-44150800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr15:44120600-44156600	Weak transcription	Fetal Brain Male	brain
24	chr15:44120600-44157800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:44120600-44158600	Weak transcription	Colonic Mucosa	Colon
26	chr15:44120600-44159600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr15:44120600-44161200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr15:44120600-44164600	Weak transcription	Brain Hippocampus Middle	brain
29	chr15:44120600-44164600	Weak transcription	NHEK	skin
30	chr15:44120600-44165800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:44121000-44143000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr15:44121000-44143200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr15:44121000-44143200	Weak transcription	HSMM	muscle
34	chr15:44121000-44177600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr15:44121400-44159600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr15:44121400-44160600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:44121600-44150800	Weak transcription	Fetal Heart	heart
38	chr15:44121600-44151200	Weak transcription	NHLF	lung
39	chr15:44122000-44157000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr15:44122400-44143200	Weak transcription	Placenta	Placenta
41	chr15:44124000-44166000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:44124600-44150800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:44126200-44140800	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr15:44126400-44140200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:44126400-44140800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:44126800-44140800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr15:44128200-44139800	Weak transcription	Fetal Muscle Leg	muscle
48	chr15:44128200-44151800	Weak transcription	Fetal Lung	lung
49	chr15:44128200-44151800	Weak transcription	Left Ventricle	heart
50	chr15:44128200-44167800	Weak transcription	Ovary	ovary

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