Variant report

Variant	rs56381026
Chromosome Location	chr6:29591433-29591434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29578000..29583607-chr6:29584816..29592316,14	K562	blood:
2	chr6:29590884..29592838-chr6:29594081..29596574,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204681	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17184388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17218739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2076482	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2267634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28359990	0.89[ASN][1000 genomes]
rs28359991	0.89[ASN][1000 genomes]
rs3025640	0.89[ASN][1000 genomes]
rs55650674	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55662018	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61744969	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61997184	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9258000	0.92[ASN][1000 genomes]
rs9258033	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29566400-29595200	Weak transcription	Right Atrium	heart
2	chr6:29567600-29592400	Strong transcription	Fetal Stomach	stomach
3	chr6:29567600-29595400	Weak transcription	A549	lung
4	chr6:29568600-29595200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:29569000-29592400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:29569200-29592200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:29569400-29592000	Strong transcription	Stomach Smooth Muscle	stomach
8	chr6:29569400-29595600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:29572200-29595600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:29572400-29592000	Strong transcription	Fetal Brain Female	brain
11	chr6:29572400-29593000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:29574400-29595400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:29574800-29595000	Weak transcription	Pancreas	Pancrea
14	chr6:29575400-29591600	Weak transcription	Colonic Mucosa	Colon
15	chr6:29577000-29591600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:29577600-29595400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:29578800-29595200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:29580400-29592200	Strong transcription	Muscle Satellite Cultured Cells	--
19	chr6:29581200-29591600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:29581800-29596000	Weak transcription	Fetal Heart	heart
21	chr6:29582600-29595400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:29583800-29592200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:29585400-29591600	Strong transcription	K562	blood
24	chr6:29585400-29591800	Strong transcription	Fetal Muscle Trunk	muscle
25	chr6:29585400-29591800	Strong transcription	NH-A	brain
26	chr6:29585400-29591800	Strong transcription	NHLF	lung
27	chr6:29585400-29592000	Strong transcription	Adipose Nuclei	Adipose
28	chr6:29585400-29592200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:29585400-29592200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:29585400-29592400	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr6:29585600-29591800	Strong transcription	Primary B cells from peripheral blood	blood
32	chr6:29585600-29591800	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:29585600-29591800	Strong transcription	Fetal Lung	lung
34	chr6:29585800-29591800	Strong transcription	HMEC	breast
35	chr6:29585800-29592200	Strong transcription	Fetal Muscle Leg	muscle
36	chr6:29585800-29592800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:29585800-29592800	Strong transcription	NHEK	skin
38	chr6:29586000-29592600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:29586400-29592400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr6:29586400-29592800	Weak transcription	Fetal Brain Male	brain
41	chr6:29586600-29591600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:29586600-29591800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:29586600-29591800	Strong transcription	Spleen	Spleen
44	chr6:29587000-29591600	Strong transcription	Gastric	stomach
45	chr6:29587000-29591800	Strong transcription	Ovary	ovary
46	chr6:29587200-29591600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:29587200-29591600	Strong transcription	Lung	lung
48	chr6:29587200-29591800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:29587200-29591800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:29587200-29591800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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