Variant report

Variant	rs9258000
Chromosome Location	chr6:29655479-29655480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs17184142	0.87[ASN][1000 genomes]
rs17184388	0.92[ASN][1000 genomes]
rs17218739	0.92[ASN][1000 genomes]
rs2076482	1.00[ASN][1000 genomes]
rs2076489	0.82[ASN][1000 genomes]
rs2267634	0.92[ASN][1000 genomes]
rs28359990	0.81[ASN][1000 genomes]
rs28359991	0.81[ASN][1000 genomes]
rs3025640	0.81[ASN][1000 genomes]
rs3906250	0.88[EUR][1000 genomes]
rs55650674	0.92[ASN][1000 genomes]
rs55662018	0.92[ASN][1000 genomes]
rs56333170	0.82[ASN][1000 genomes]
rs56381026	0.92[ASN][1000 genomes]
rs60614201	0.87[ASN][1000 genomes]
rs61744969	0.92[ASN][1000 genomes]
rs61997184	0.92[ASN][1000 genomes]
rs73400990	0.87[ASN][1000 genomes]
rs73400991	0.87[ASN][1000 genomes]
rs73400996	0.87[ASN][1000 genomes]
rs73402705	0.87[ASN][1000 genomes]
rs9258033	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9258130	0.94[EUR][1000 genomes]
rs9258132	0.94[EUR][1000 genomes]
rs9258253	0.88[EUR][1000 genomes]
rs9258286	0.88[EUR][1000 genomes]
rs9258385	0.88[EUR][1000 genomes]
rs9258390	0.88[EUR][1000 genomes]
rs9258391	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv883530	chr6:29645038-29677641	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29625000-29663600	Weak transcription	Right Atrium	heart
2	chr6:29648800-29662600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:29652200-29656000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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