Variant report

Variant	rs17184142
Chromosome Location	chr6:29475761-29475762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29469820..29472263-chr6:29475289..29476878,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs16894861	1.00[ASN][1000 genomes]
rs16894869	1.00[ASN][1000 genomes]
rs16894873	1.00[ASN][1000 genomes]
rs16894875	1.00[ASN][1000 genomes]
rs16894876	1.00[ASN][1000 genomes]
rs16894878	1.00[ASN][1000 genomes]
rs16894885	1.00[ASN][1000 genomes]
rs16894889	1.00[ASN][1000 genomes]
rs16894898	1.00[ASN][1000 genomes]
rs16894899	1.00[ASN][1000 genomes]
rs16894902	1.00[ASN][1000 genomes]
rs17177632	1.00[ASN][1000 genomes]
rs17177674	0.87[ASN][1000 genomes]
rs17184044	1.00[ASN][1000 genomes]
rs17184107	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17839876	1.00[ASN][1000 genomes]
rs17839877	1.00[ASN][1000 genomes]
rs2074465	1.00[ASN][1000 genomes]
rs2074467	1.00[ASN][1000 genomes]
rs2076482	0.87[ASN][1000 genomes]
rs34897885	1.00[ASN][1000 genomes]
rs56783728	1.00[ASN][1000 genomes]
rs57149332	1.00[ASN][1000 genomes]
rs58102503	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58355492	1.00[ASN][1000 genomes]
rs58921752	1.00[ASN][1000 genomes]
rs60614201	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61010313	1.00[ASN][1000 genomes]
rs61016108	1.00[ASN][1000 genomes]
rs6904456	1.00[ASN][1000 genomes]
rs6907220	0.92[ASN][1000 genomes]
rs6913659	1.00[ASN][1000 genomes]
rs6922217	1.00[ASN][1000 genomes]
rs6923405	1.00[ASN][1000 genomes]
rs6935708	0.96[ASN][1000 genomes]
rs73398940	1.00[ASN][1000 genomes]
rs73398942	1.00[ASN][1000 genomes]
rs73398943	1.00[ASN][1000 genomes]
rs73398966	1.00[ASN][1000 genomes]
rs73398969	1.00[ASN][1000 genomes]
rs73398972	1.00[ASN][1000 genomes]
rs73398974	1.00[ASN][1000 genomes]
rs73398987	1.00[ASN][1000 genomes]
rs73398988	1.00[ASN][1000 genomes]
rs73399002	0.96[ASN][1000 genomes]
rs73400907	0.96[ASN][1000 genomes]
rs73400978	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73400990	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73400991	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73400996	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73402705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73403386	1.00[ASN][1000 genomes]
rs7738742	0.96[ASN][1000 genomes]
rs7768854	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9258000	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv883529	chr6:29464365-29494897	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29468600-29496200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:29475200-29477800	Enhancers	GM12878-XiMat	blood
3	chr6:29475600-29475800	Enhancers	HSMMtube	muscle

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