Variant report

Variant	rs17839877
Chromosome Location	chr6:29394474-29394475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:29394189..29395109-chr6:29478134..29478678,2	MCF-7	breast:
2	chr6:29394178..29395019-chr6:29556973..29557853,2	MCF-7	breast:
3	chr6:29394208..29394759-chr6:29557255..29557773,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs16894861	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894869	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894873	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894875	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894876	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894878	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894898	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894900	1.00[AFR][1000 genomes]
rs16894902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17177632	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17177674	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17184044	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17184107	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17184142	1.00[ASN][1000 genomes]
rs17839876	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2074465	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2074467	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34897885	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56783728	1.00[ASN][1000 genomes]
rs57149332	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58102503	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58355492	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58921752	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60614201	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61010313	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61016108	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907220	0.92[ASN][1000 genomes]
rs6913659	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935708	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73398940	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398942	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398943	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398966	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398969	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398972	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398974	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398987	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398988	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399002	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73400907	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73400978	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400990	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400991	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400996	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402705	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403386	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738742	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7768854	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29392600-29399800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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