Variant report
| Variant | rs16894900 |
|---|---|
| Chromosome Location | chr6:29395499-29395500 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-MAS1L-3 | chr6:29395420-29395509 | NONHSAT108518 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10946992 | 1.00[ASN][1000 genomes] |
| rs16894861 | 1.00[AFR][1000 genomes] |
| rs16894869 | 1.00[AFR][1000 genomes] |
| rs16894873 | 1.00[AFR][1000 genomes] |
| rs16894875 | 1.00[AFR][1000 genomes] |
| rs16894876 | 1.00[AFR][1000 genomes] |
| rs16894878 | 1.00[AFR][1000 genomes] |
| rs16894885 | 1.00[AFR][1000 genomes] |
| rs16894889 | 1.00[AFR][1000 genomes] |
| rs16894898 | 0.88[AFR][1000 genomes] |
| rs16894899 | 1.00[AFR][1000 genomes] |
| rs16894902 | 1.00[AFR][1000 genomes] |
| rs16894921 | 1.00[ASN][1000 genomes] |
| rs16894927 | 0.97[ASN][1000 genomes] |
| rs16894929 | 0.97[ASN][1000 genomes] |
| rs16894932 | 0.94[ASN][1000 genomes] |
| rs17839876 | 1.00[AFR][1000 genomes] |
| rs17839877 | 1.00[AFR][1000 genomes] |
| rs2074468 | 1.00[ASN][1000 genomes] |
| rs34897885 | 1.00[AFR][1000 genomes] |
| rs57994627 | 1.00[ASN][1000 genomes] |
| rs60194987 | 1.00[ASN][1000 genomes] |
| rs60529529 | 0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs61224854 | 1.00[ASN][1000 genomes] |
| rs6456951 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6904456 | 1.00[AFR][1000 genomes] |
| rs6906307 | 0.94[ASN][1000 genomes] |
| rs6906897 | 0.97[ASN][1000 genomes] |
| rs6922217 | 1.00[AFR][1000 genomes] |
| rs6923405 | 1.00[AFR][1000 genomes] |
| rs6934737 | 0.97[ASN][1000 genomes] |
| rs73400915 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73400979 | 0.94[ASN][1000 genomes] |
| rs7738548 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7738722 | 0.97[ASN][1000 genomes] |
| rs7738736 | 0.97[ASN][1000 genomes] |
| rs7739243 | 0.97[ASN][1000 genomes] |
| rs7746356 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830624 | chr6:29274525-29445565 | Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv965635 | chr6:29395355-29402762 | Enhancers Weak transcription | TF binding regionCpG islandlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:29392600-29399800 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
