Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29454260..29456802-chr6:29460764..29462349,2	K562	blood:
2	chr6:29460358..29463035-chr6:29483811..29485363,2	K562	blood:

Variant related genes	Relation type
ENSG00000204687	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10946992	0.94[ASN][1000 genomes]
rs16894900	0.94[ASN][1000 genomes]
rs16894921	0.94[ASN][1000 genomes]
rs16894927	0.91[ASN][1000 genomes]
rs16894929	0.91[ASN][1000 genomes]
rs16894932	0.88[ASN][1000 genomes]
rs16894964	0.84[AFR][1000 genomes]
rs17184114	0.84[AFR][1000 genomes]
rs2074468	0.94[ASN][1000 genomes]
rs56783728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57994627	0.94[ASN][1000 genomes]
rs60194987	0.94[ASN][1000 genomes]
rs60529529	0.87[ASN][1000 genomes]
rs61224854	0.94[ASN][1000 genomes]
rs6456951	0.94[ASN][1000 genomes]
rs6906307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906897	0.91[ASN][1000 genomes]
rs6907220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6934737	0.91[ASN][1000 genomes]
rs73400915	0.94[ASN][1000 genomes]
rs7738548	0.94[ASN][1000 genomes]
rs7738722	0.91[ASN][1000 genomes]
rs7738736	0.91[ASN][1000 genomes]
rs7739243	0.91[ASN][1000 genomes]
rs7746356	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768854	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29459400-29462200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:29461800-29462400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:29461800-29462600	Enhancers	K562	blood

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