Variant report

Variant	rs60529529
Chromosome Location	chr6:29404550-29404551
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:29404325-29404866	SK-N-SH	brain:	n/a	n/a
2	RAD21	chr6:29404517-29404831	H1-hESC	embryonic stem cell:	n/a	chr6:29404686-29404698
3	CTCF	chr6:29404509-29404804	K562	blood:	n/a	n/a
4	SPI1	chr6:29404519-29404782	K562	blood:	n/a	n/a
5	CTCF	chr6:29404508-29404845	K562	blood:	n/a	n/a
6	CTCF	chr6:29404471-29404852	K562	blood:	n/a	n/a
7	RAD21	chr6:29404404-29404838	H1-hESC	embryonic stem cell:	n/a	chr6:29404686-29404698
8	CTCF	chr6:29404491-29404857	K562	blood:	n/a	n/a
9	SPI1	chr6:29404519-29404757	K562	blood:	n/a	n/a
10	CTCF	chr6:29404546-29404816	H1-hESC	embryonic stem cell:	n/a	n/a
11	SPI1	chr6:29404524-29404751	GM12891	blood:	n/a	n/a
12	YY1	chr6:29404545-29404796	K562	blood:	n/a	chr6:29404722-29404736 chr6:29404675-29404697 chr6:29404685-29404697 chr6:29404686-29404694
13	YY1	chr6:29404537-29404780	K562	blood:	n/a	chr6:29404722-29404736 chr6:29404675-29404697 chr6:29404685-29404697 chr6:29404686-29404694
14	GATA3	chr6:29404500-29404856	T-47D	breast:	n/a	n/a
15	RAD21	chr6:29404483-29404782	SK-N-SH_RA	brain:	n/a	chr6:29404686-29404698
16	MAFK	chr6:29404332-29404569	HepG2	liver:	n/a	n/a
17	SMC3	chr6:29404517-29404794	K562	blood:	n/a	n/a
18	RAD21	chr6:29404528-29404879	H1-hESC	embryonic stem cell:	n/a	chr6:29404686-29404698

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29403021..29405389-chr6:29406717..29409334,2	MCF-7	breast:
2	chr6:29404282..29405998-chr6:29406216..29408670,2	K562	blood:

Variant related genes	Relation type
OR10C1	TF binding region
OR5V1	TF binding region
ENSG00000206474	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10946992	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16894900	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16894921	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16894927	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16894929	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16894932	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17177632	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17177674	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2074465	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2074467	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2074468	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57149332	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs57994627	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58355492	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs58921752	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs60194987	0.94[ASN][1000 genomes]
rs61016108	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs61224854	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6456951	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6906307	0.87[ASN][1000 genomes]
rs6906897	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6913659	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6934737	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73398940	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73398942	1.00[AFR][1000 genomes]
rs73398943	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73398966	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73398972	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73398974	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73398987	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73398988	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73399002	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73400907	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73400915	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73400979	0.87[ASN][1000 genomes]
rs73403386	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7738548	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7738722	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7738736	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7738742	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7739243	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7746356	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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