Variant report
| Variant | rs6906307 |
|---|---|
| Chromosome Location | chr6:29463892-29463893 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | JUND | chr6:29463645-29463952 | HepG2 | liver: | n/a | chr6:29463795-29463804 chr6:29463794-29463805 chr6:29463796-29463804 chr6:29463797-29463804 |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:29457898..29460263-chr6:29462415..29464583,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000229274 | TF binding region |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10946992 | 0.94[ASN][1000 genomes] |
| rs16894900 | 0.94[ASN][1000 genomes] |
| rs16894921 | 0.94[ASN][1000 genomes] |
| rs16894927 | 0.91[ASN][1000 genomes] |
| rs16894929 | 0.91[ASN][1000 genomes] |
| rs16894932 | 0.88[ASN][1000 genomes] |
| rs16894964 | 0.84[AFR][1000 genomes] |
| rs17184114 | 0.84[AFR][1000 genomes] |
| rs2074468 | 0.94[ASN][1000 genomes] |
| rs56783728 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57994627 | 0.94[ASN][1000 genomes] |
| rs60194987 | 0.94[ASN][1000 genomes] |
| rs60529529 | 0.87[ASN][1000 genomes] |
| rs61224854 | 0.94[ASN][1000 genomes] |
| rs6456951 | 0.94[ASN][1000 genomes] |
| rs6906897 | 0.91[ASN][1000 genomes] |
| rs6907220 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6934737 | 0.91[ASN][1000 genomes] |
| rs73400915 | 0.94[ASN][1000 genomes] |
| rs73400979 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7738548 | 0.94[ASN][1000 genomes] |
| rs7738722 | 0.91[ASN][1000 genomes] |
| rs7738736 | 0.91[ASN][1000 genomes] |
| rs7739243 | 0.91[ASN][1000 genomes] |
| rs7746356 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7768854 | 0.86[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3424039 | chr6:29439297-29504564 | Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv883528 | chr6:29447724-29494897 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
