Variant report

Variant	rs56783728
Chromosome Location	chr6:29459769-29459770
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr6:29459092-29459845	K562	blood:	n/a	n/a
2	JUN	chr6:29459295-29459853	K562	blood:	n/a	n/a
3	RCOR1	chr6:29459590-29459779	K562	blood:	n/a	n/a
4	RCOR1	chr6:29459408-29459769	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29457898..29460263-chr6:29462415..29464583,2	K562	blood:

Variant related genes	Relation type
MAS1L	TF binding region
RPS17P1	TF binding region

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs16894861	1.00[ASN][1000 genomes]
rs16894869	1.00[ASN][1000 genomes]
rs16894873	1.00[ASN][1000 genomes]
rs16894875	1.00[ASN][1000 genomes]
rs16894876	1.00[ASN][1000 genomes]
rs16894878	1.00[ASN][1000 genomes]
rs16894885	1.00[ASN][1000 genomes]
rs16894889	1.00[ASN][1000 genomes]
rs16894898	1.00[ASN][1000 genomes]
rs16894899	1.00[ASN][1000 genomes]
rs16894902	1.00[ASN][1000 genomes]
rs16894964	0.84[AFR][1000 genomes]
rs17177632	1.00[ASN][1000 genomes]
rs17177674	0.87[ASN][1000 genomes]
rs17184044	1.00[ASN][1000 genomes]
rs17184107	1.00[ASN][1000 genomes]
rs17184114	0.84[AFR][1000 genomes]
rs17184142	1.00[ASN][1000 genomes]
rs17839876	1.00[ASN][1000 genomes]
rs17839877	1.00[ASN][1000 genomes]
rs2074465	1.00[ASN][1000 genomes]
rs2074467	1.00[ASN][1000 genomes]
rs2076482	0.87[ASN][1000 genomes]
rs34897885	1.00[ASN][1000 genomes]
rs57149332	1.00[ASN][1000 genomes]
rs58102503	1.00[ASN][1000 genomes]
rs58355492	1.00[ASN][1000 genomes]
rs58921752	1.00[ASN][1000 genomes]
rs60614201	1.00[ASN][1000 genomes]
rs61010313	1.00[ASN][1000 genomes]
rs61016108	1.00[ASN][1000 genomes]
rs6904456	1.00[ASN][1000 genomes]
rs6906307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6907220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6913659	1.00[ASN][1000 genomes]
rs6922217	1.00[ASN][1000 genomes]
rs6923405	1.00[ASN][1000 genomes]
rs6935708	0.96[ASN][1000 genomes]
rs73398940	1.00[ASN][1000 genomes]
rs73398942	1.00[ASN][1000 genomes]
rs73398943	1.00[ASN][1000 genomes]
rs73398966	1.00[ASN][1000 genomes]
rs73398969	1.00[ASN][1000 genomes]
rs73398972	1.00[ASN][1000 genomes]
rs73398974	1.00[ASN][1000 genomes]
rs73398987	1.00[ASN][1000 genomes]
rs73398988	1.00[ASN][1000 genomes]
rs73399002	0.96[ASN][1000 genomes]
rs73400907	0.96[ASN][1000 genomes]
rs73400978	1.00[ASN][1000 genomes]
rs73400979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400990	1.00[ASN][1000 genomes]
rs73400991	1.00[ASN][1000 genomes]
rs73400996	1.00[ASN][1000 genomes]
rs73402705	1.00[ASN][1000 genomes]
rs73403386	1.00[ASN][1000 genomes]
rs7738742	0.96[ASN][1000 genomes]
rs7768854	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29457200-29461200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:29457800-29459800	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:29457800-29459800	Enhancers	K562	blood
4	chr6:29459000-29461200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:29459400-29462200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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