Variant report

Variant	rs17184107
Chromosome Location	chr6:29455098-29455099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29434261..29435839-chr6:29452792..29455620,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs16894861	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894869	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894873	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894875	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894876	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894878	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894885	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894889	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894898	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894899	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894902	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17177632	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17177674	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17184044	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17184142	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17839876	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17839877	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2074465	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2074467	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2076482	0.87[ASN][1000 genomes]
rs34897885	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56783728	1.00[ASN][1000 genomes]
rs57149332	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58102503	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58355492	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58921752	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60614201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61010313	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61016108	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904456	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907220	0.92[ASN][1000 genomes]
rs6913659	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922217	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923405	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935708	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73398940	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398942	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398943	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398966	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398969	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398974	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398987	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398988	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399002	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73400907	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73400978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400991	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400996	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402705	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403386	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738742	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7768854	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29452200-29457000	Weak transcription	Liver	Liver
2	chr6:29454000-29455600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:29454200-29455400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:29454400-29456000	Enhancers	K562	blood
5	chr6:29454800-29457800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:29455000-29457200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links