Variant report

Variant	rs6907220
Chromosome Location	chr6:29464365-29464366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29457898..29460263-chr6:29462415..29464583,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs16894861	0.92[ASN][1000 genomes]
rs16894869	0.92[ASN][1000 genomes]
rs16894873	0.92[ASN][1000 genomes]
rs16894875	0.92[ASN][1000 genomes]
rs16894876	0.92[ASN][1000 genomes]
rs16894878	0.92[ASN][1000 genomes]
rs16894885	0.92[ASN][1000 genomes]
rs16894889	0.92[ASN][1000 genomes]
rs16894898	0.92[ASN][1000 genomes]
rs16894899	0.92[ASN][1000 genomes]
rs16894902	0.92[ASN][1000 genomes]
rs16894964	0.84[AFR][1000 genomes]
rs17177632	0.92[ASN][1000 genomes]
rs17177674	0.80[ASN][1000 genomes]
rs17184044	0.92[ASN][1000 genomes]
rs17184107	0.92[ASN][1000 genomes]
rs17184114	0.84[AFR][1000 genomes]
rs17184142	0.92[ASN][1000 genomes]
rs17839876	0.92[ASN][1000 genomes]
rs17839877	0.92[ASN][1000 genomes]
rs2074465	0.92[ASN][1000 genomes]
rs2074467	0.92[ASN][1000 genomes]
rs2076482	0.80[ASN][1000 genomes]
rs34897885	0.92[ASN][1000 genomes]
rs56783728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57149332	0.92[ASN][1000 genomes]
rs58102503	0.92[ASN][1000 genomes]
rs58355492	0.92[ASN][1000 genomes]
rs58921752	0.92[ASN][1000 genomes]
rs60614201	0.92[ASN][1000 genomes]
rs61010313	0.92[ASN][1000 genomes]
rs61016108	0.92[ASN][1000 genomes]
rs6904456	0.92[ASN][1000 genomes]
rs6906307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6913659	0.92[ASN][1000 genomes]
rs6922217	0.92[ASN][1000 genomes]
rs6923405	0.92[ASN][1000 genomes]
rs6935708	0.88[ASN][1000 genomes]
rs73398940	0.92[ASN][1000 genomes]
rs73398942	0.92[ASN][1000 genomes]
rs73398943	0.92[ASN][1000 genomes]
rs73398966	0.92[ASN][1000 genomes]
rs73398969	0.92[ASN][1000 genomes]
rs73398972	0.92[ASN][1000 genomes]
rs73398974	0.92[ASN][1000 genomes]
rs73398987	0.92[ASN][1000 genomes]
rs73398988	0.92[ASN][1000 genomes]
rs73399002	0.88[ASN][1000 genomes]
rs73400907	0.88[ASN][1000 genomes]
rs73400978	0.92[ASN][1000 genomes]
rs73400979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73400990	0.92[ASN][1000 genomes]
rs73400991	0.92[ASN][1000 genomes]
rs73400996	0.92[ASN][1000 genomes]
rs73402705	0.92[ASN][1000 genomes]
rs73403386	0.92[ASN][1000 genomes]
rs7738742	0.88[ASN][1000 genomes]
rs7746356	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7768854	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv883529	chr6:29464365-29494897	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29464000-29464400	Enhancers	K562	blood

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