Variant report

Variant	rs73399002
Chromosome Location	chr6:29414733-29414734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs16894861	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16894869	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16894873	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16894875	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16894876	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16894878	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16894885	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16894889	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16894898	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16894899	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16894902	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17177632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17177674	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17184044	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17184107	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17184142	0.96[ASN][1000 genomes]
rs17839876	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17839877	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2074465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2074467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2076482	0.84[ASN][1000 genomes]
rs34897885	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56783728	0.96[ASN][1000 genomes]
rs57149332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58102503	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58355492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58921752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60529529	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs60614201	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61010313	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61016108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6904456	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6907220	0.88[ASN][1000 genomes]
rs6913659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6922217	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6923405	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6935708	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73398942	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73398943	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73398966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73398969	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73398972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73398974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73398987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73398988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73400907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400978	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73400990	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73400991	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73400996	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73402705	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73403386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7738742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768854	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv15709	chr6:29413527-29415648	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29413400-29415600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:29414200-29415200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:29414200-29415400	Enhancers	H9 Cell Line	embryonic stem cell
4	chr6:29414200-29416000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:29414200-29418000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:29414400-29415400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:29414600-29415000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:29414600-29415400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:29414600-29415600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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