Variant report

Variant	rs56383226
Chromosome Location	chr8:49542283-49542284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49539159..49543167-chr8:49831897..49834584,3	MCF-7	breast:
2	chr8:49541767..49544762-chr8:49827612..49829547,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000019549	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12545638	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12549320	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1905108	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1976023	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2004389	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28770570	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs745487	0.98[ASN][1000 genomes]
rs7463127	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49534400-49556000	Weak transcription	Pancreas	Pancrea
2	chr8:49534600-49543000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:49537600-49547000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr8:49537800-49542400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:49538400-49545800	Weak transcription	Fetal Stomach	stomach
6	chr8:49538600-49546200	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:49538800-49544000	Enhancers	HMEC	breast
8	chr8:49539000-49543200	Enhancers	A549	lung
9	chr8:49539000-49543600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:49539000-49546000	Weak transcription	Fetal Kidney	kidney
11	chr8:49539200-49544200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:49539200-49544200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:49539600-49544000	Enhancers	NHEK	skin
14	chr8:49539800-49544200	Enhancers	NH-A	brain
15	chr8:49540000-49543000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr8:49540000-49543600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:49540200-49542600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:49540200-49543000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:49540400-49542600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:49540400-49542800	Weak transcription	NHDF-Ad	bronchial
21	chr8:49540400-49543000	Weak transcription	NHLF	lung
22	chr8:49540400-49543200	Enhancers	Hela-S3	cervix
23	chr8:49540400-49545800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr8:49541600-49543000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:49541800-49542400	Weak transcription	HSMM	muscle
26	chr8:49541800-49542800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:49541800-49542800	Weak transcription	HUVEC	blood vessel
28	chr8:49541800-49542800	Weak transcription	Osteobl	bone
29	chr8:49541800-49543000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr8:49542200-49543200	Enhancers	Placenta	Placenta
31	chr8:49542200-49544000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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