Variant report

Variant	rs745487
Chromosome Location	chr8:49548261-49548262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12544004	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs12545638	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.94[ASN][1000 genomes]
rs12549320	0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1473441	0.89[AMR][1000 genomes]
rs1871890	0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs1905108	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.93[ASN][1000 genomes]
rs1976023	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2004389	0.96[ASN][1000 genomes]
rs28770570	0.94[ASN][1000 genomes]
rs56383226	0.98[ASN][1000 genomes]
rs62509355	0.88[AMR][1000 genomes]
rs7463127	0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs745487	EFCAB1	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49534400-49556000	Weak transcription	Pancreas	Pancrea
2	chr8:49543200-49548400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:49544400-49555400	Weak transcription	Osteobl	bone
4	chr8:49546600-49554400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr8:49547000-49548800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:49547200-49551200	Weak transcription	Ovary	ovary
7	chr8:49547400-49553400	Weak transcription	Fetal Lung	lung
8	chr8:49548000-49549400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:49548200-49548400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:49548200-49548800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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