Variant report

Variant	rs1871890
Chromosome Location	chr8:49545903-49545904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1384217	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1384219	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1482265	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1564579	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1905109	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28786183	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4265212	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6471950	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6991516	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs745487	0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs7822883	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs970767	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49534400-49556000	Weak transcription	Pancreas	Pancrea
2	chr8:49537600-49547000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr8:49538600-49546200	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:49539000-49546000	Weak transcription	Fetal Kidney	kidney
5	chr8:49543200-49546000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr8:49543200-49546000	Weak transcription	Placenta	Placenta
7	chr8:49543200-49548000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:49543200-49548400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:49543400-49548000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:49543600-49548200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:49544200-49548200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:49544400-49555400	Weak transcription	Osteobl	bone
13	chr8:49545800-49546000	Enhancers	Fetal Lung	lung
14	chr8:49545800-49546200	Enhancers	Ovary	ovary
15	chr8:49545800-49546400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:49545800-49546600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr8:49545800-49546600	Enhancers	Fetal Stomach	stomach
18	chr8:49545800-49547200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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