Variant report

Variant	rs1384219
Chromosome Location	chr8:49553357-49553358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1384217	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1482265	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1564579	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1871890	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1905109	0.96[EUR][1000 genomes]
rs2046235	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs28786183	0.96[EUR][1000 genomes]
rs4265212	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471945	0.85[EUR][1000 genomes]
rs6471950	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6987398	0.81[JPT][hapmap]
rs6991516	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs7018074	0.82[EUR][1000 genomes]
rs7822883	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs970767	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49534400-49556000	Weak transcription	Pancreas	Pancrea
2	chr8:49544400-49555400	Weak transcription	Osteobl	bone
3	chr8:49546600-49554400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:49547400-49553400	Weak transcription	Fetal Lung	lung
5	chr8:49549400-49553400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:49550200-49555800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr8:49550400-49554200	Weak transcription	Placenta	Placenta
8	chr8:49550400-49556000	Weak transcription	NH-A	brain
9	chr8:49551200-49560800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:49551200-49563400	Enhancers	Ovary	ovary
11	chr8:49552000-49556200	Weak transcription	Left Ventricle	heart
12	chr8:49552200-49555400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:49552800-49553600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:49553000-49553600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:49553000-49553600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr8:49553000-49553600	Enhancers	HMEC	breast
17	chr8:49553000-49553600	Enhancers	NHEK	skin
18	chr8:49553000-49560000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:49553200-49553400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr8:49553200-49553800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:49553200-49554200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:49553200-49554200	Weak transcription	Fetal Stomach	stomach

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