Variant report

Variant	rs6987398
Chromosome Location	chr8:49581639-49581640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1384217	0.82[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap]
rs1384219	0.81[JPT][hapmap]
rs1564579	0.84[CHD][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap]
rs2046235	0.81[CHD][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap]
rs2128239	0.92[EUR][1000 genomes]
rs4077103	0.91[EUR][1000 genomes]
rs4242451	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs4265212	0.84[CHD][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap]
rs6471950	0.81[JPT][hapmap]
rs7822883	0.82[GIH][hapmap];1.00[MEX][hapmap]
rs7825918	0.87[CEU][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs970767	0.84[CHD][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49570000-49584000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49573400-49586000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:49580200-49586600	Enhancers	Fetal Lung	lung
4	chr8:49581200-49587800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:49581400-49581800	Enhancers	Fetal Stomach	stomach
6	chr8:49581600-49582800	Weak transcription	Ovary	ovary
7	chr8:49581600-49584000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:49581600-49584200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr8:49581600-49584400	Weak transcription	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links