Variant report

Variant	rs6471950
Chromosome Location	chr8:49572341-49572342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1384217	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384219	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1482265	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1564579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1871890	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1905109	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2046235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs28786183	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4265212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471945	0.90[EUR][1000 genomes]
rs6987398	0.81[JPT][hapmap]
rs6991516	1.00[CEU][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7018074	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7822883	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs970767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49563200-49572800	Weak transcription	Pancreas	Pancrea
2	chr8:49567400-49575800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:49570000-49584000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:49570200-49575200	Weak transcription	Fetal Lung	lung
5	chr8:49571400-49573400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:49571600-49572800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:49571600-49572800	Flanking Active TSS	NHEK	skin
8	chr8:49571800-49572400	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr8:49571800-49572400	Flanking Active TSS	HMEC	breast
10	chr8:49571800-49572800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr8:49572200-49577400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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