Variant report

Variant	rs6471945
Chromosome Location	chr8:49563320-49563321
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1384217	0.96[TSI][hapmap];0.90[EUR][1000 genomes]
rs1384219	0.85[EUR][1000 genomes]
rs1482265	0.84[EUR][1000 genomes]
rs1564579	0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs1905109	0.81[EUR][1000 genomes]
rs2128239	0.87[AMR][1000 genomes]
rs28786183	0.81[EUR][1000 genomes]
rs4077103	0.87[AMR][1000 genomes]
rs4242451	0.81[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes]
rs4265212	0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs6471950	0.90[EUR][1000 genomes]
rs6991516	0.83[EUR][1000 genomes]
rs6999198	0.96[YRI][hapmap]
rs7822883	0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs7825918	0.81[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs970767	0.92[TSI][hapmap];0.90[EUR][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49551200-49563400	Enhancers	Ovary	ovary
2	chr8:49556600-49565600	Weak transcription	NH-A	brain
3	chr8:49557600-49566000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr8:49558000-49563400	Enhancers	Fetal Muscle Trunk	muscle
5	chr8:49558000-49563400	Enhancers	Fetal Muscle Leg	muscle
6	chr8:49558000-49564600	Enhancers	Fetal Lung	lung
7	chr8:49558200-49564400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:49559200-49565600	Weak transcription	Gastric	stomach
9	chr8:49559400-49563600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr8:49559400-49564400	Enhancers	HSMM	muscle
11	chr8:49560000-49566400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:49560200-49564400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr8:49560600-49567600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:49560800-49563400	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr8:49560800-49564400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:49560800-49564800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:49561000-49565600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr8:49561000-49567600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:49561000-49567600	Enhancers	Osteobl	bone
20	chr8:49561200-49563800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:49561200-49564600	Enhancers	Liver	Liver
22	chr8:49561400-49567000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr8:49561600-49564200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:49561800-49564200	Enhancers	Adipose Nuclei	Adipose
25	chr8:49561800-49564200	Enhancers	NHDF-Ad	bronchial
26	chr8:49561800-49564400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:49562000-49564200	Enhancers	NHLF	lung
28	chr8:49562600-49566400	Weak transcription	Fetal Kidney	kidney
29	chr8:49562800-49563800	Weak transcription	Fetal Heart	heart
30	chr8:49562800-49564200	Weak transcription	Aorta	Aorta
31	chr8:49562800-49565400	Weak transcription	Fetal Brain Male	brain
32	chr8:49563000-49564000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr8:49563000-49565400	Weak transcription	Fetal Thymus	thymus
34	chr8:49563000-49565600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr8:49563000-49569400	Weak transcription	Spleen	Spleen
36	chr8:49563200-49563800	Weak transcription	Colon Smooth Muscle	Colon
37	chr8:49563200-49564000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr8:49563200-49564000	Weak transcription	Lung	lung
39	chr8:49563200-49564000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr8:49563200-49565400	Weak transcription	Fetal Stomach	stomach
41	chr8:49563200-49565400	Weak transcription	HSMMtube	muscle
42	chr8:49563200-49565600	Weak transcription	Left Ventricle	heart
43	chr8:49563200-49566400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr8:49563200-49566400	Weak transcription	Placenta	Placenta
45	chr8:49563200-49566600	Weak transcription	Right Atrium	heart
46	chr8:49563200-49566600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr8:49563200-49572800	Weak transcription	Pancreas	Pancrea

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