Variant report

Variant	rs7822883
Chromosome Location	chr8:49558124-49558125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49554509..49556220-chr8:49558044..49560777,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1384217	0.93[ASW][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1384219	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1482265	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1564579	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.96[EUR][1000 genomes]
rs1871890	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1905109	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2046235	0.85[MEX][hapmap]
rs28786183	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4265212	0.93[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6471945	0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs6471950	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6987398	0.82[GIH][hapmap];1.00[MEX][hapmap]
rs6991516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7018074	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs970767	0.85[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49551200-49560800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:49551200-49563400	Enhancers	Ovary	ovary
3	chr8:49553000-49560000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:49556400-49558600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:49556400-49559400	Weak transcription	Fetal Kidney	kidney
6	chr8:49556600-49558800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr8:49556600-49560600	Weak transcription	Aorta	Aorta
8	chr8:49556600-49561000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr8:49556600-49562600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:49556600-49565600	Weak transcription	NH-A	brain
11	chr8:49556800-49558200	Weak transcription	Fetal Stomach	stomach
12	chr8:49556800-49558200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr8:49556800-49558800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:49556800-49558800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:49556800-49558800	Weak transcription	HSMM	muscle
16	chr8:49556800-49559000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:49556800-49559000	Weak transcription	NHDF-Ad	bronchial
18	chr8:49556800-49559000	Weak transcription	NHLF	lung
19	chr8:49556800-49559200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:49556800-49559200	Weak transcription	HSMMtube	muscle
21	chr8:49556800-49559600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr8:49556800-49560200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:49556800-49560600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:49556800-49560800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:49556800-49560800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr8:49556800-49561000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:49556800-49561000	Weak transcription	Osteobl	bone
28	chr8:49556800-49561200	Weak transcription	Liver	Liver
29	chr8:49556800-49561800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr8:49557000-49558200	Weak transcription	Placenta	Placenta
31	chr8:49557000-49558200	Weak transcription	Left Ventricle	heart
32	chr8:49557000-49560600	Weak transcription	Pancreas	Pancrea
33	chr8:49557000-49561800	Weak transcription	Adipose Nuclei	Adipose
34	chr8:49557000-49562000	Weak transcription	Spleen	Spleen
35	chr8:49557600-49559200	Enhancers	Right Ventricle	heart
36	chr8:49557600-49560800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr8:49557600-49561200	Enhancers	Right Atrium	heart
38	chr8:49557600-49566000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr8:49557800-49559600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:49557800-49562800	Enhancers	Fetal Brain Male	brain
41	chr8:49558000-49558400	Enhancers	Lung	lung
42	chr8:49558000-49558600	Enhancers	Esophagus	oesophagus
43	chr8:49558000-49560200	Enhancers	Fetal Heart	heart
44	chr8:49558000-49563400	Enhancers	Fetal Muscle Trunk	muscle
45	chr8:49558000-49563400	Enhancers	Fetal Muscle Leg	muscle
46	chr8:49558000-49564600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links