Variant report

Variant	rs2046235
Chromosome Location	chr8:49583814-49583815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10089053	1.00[ASW][hapmap];0.82[CEU][hapmap]
rs1384217	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.97[ASN][1000 genomes]
rs1384219	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1482265	0.94[ASN][1000 genomes]
rs1564579	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.97[ASN][1000 genomes]
rs4265212	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.97[ASN][1000 genomes]
rs6471950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6987398	0.81[CHD][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap]
rs7018074	0.82[ASN][1000 genomes]
rs7822883	0.85[MEX][hapmap]
rs970767	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.97[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49570000-49584000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49573400-49586000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:49580200-49586600	Enhancers	Fetal Lung	lung
4	chr8:49581200-49587800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:49581600-49584000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:49581600-49584200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr8:49581600-49584400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr8:49582000-49584600	Enhancers	Fetal Kidney	kidney
9	chr8:49582200-49584400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr8:49582800-49584200	Enhancers	Ovary	ovary
11	chr8:49582800-49587800	Enhancers	Lung	lung
12	chr8:49583400-49584200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:49583400-49584400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr8:49583400-49586000	Weak transcription	Fetal Intestine Small	intestine
15	chr8:49583600-49584000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr8:49583600-49584200	Bivalent Enhancer	Fetal Stomach	stomach
17	chr8:49583600-49584400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr8:49583600-49584600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr8:49583600-49584600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr8:49583600-49585400	Enhancers	Left Ventricle	heart
21	chr8:49583600-49585800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:49583600-49585800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:49583600-49586400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:49583600-49588200	Weak transcription	Small Intestine	intestine
25	chr8:49583600-49590000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr8:49583800-49584200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr8:49583800-49584200	Enhancers	Fetal Muscle Leg	muscle
28	chr8:49583800-49584400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr8:49583800-49584400	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr8:49583800-49585000	Weak transcription	Aorta	Aorta
31	chr8:49583800-49585200	Enhancers	Fetal Muscle Trunk	muscle
32	chr8:49583800-49585200	Enhancers	Gastric	stomach
33	chr8:49583800-49587200	Enhancers	Right Atrium	heart

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