Variant report

Variant	rs56384328
Chromosome Location	chr18:12890386-12890387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2292758	0.83[ASN][1000 genomes]
rs45579734	0.88[ASN][1000 genomes]
rs4797708	0.88[ASN][1000 genomes]
rs60803113	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6505769	0.88[ASN][1000 genomes]
rs7238238	0.88[ASN][1000 genomes]
rs7241650	0.88[ASN][1000 genomes]
rs72872144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72872183	0.84[EUR][1000 genomes]
rs73950684	0.86[ASN][1000 genomes]
rs73950685	0.89[ASN][1000 genomes]
rs8084365	0.88[ASN][1000 genomes]
rs8089521	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8091305	0.86[ASN][1000 genomes]
rs8098730	0.88[ASN][1000 genomes]
rs9954778	0.87[ASN][1000 genomes]
rs9961827	0.85[ASN][1000 genomes]
rs9961931	0.88[ASN][1000 genomes]
rs9966378	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063125	chr18:12046892-12918251	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	130 gene(s)	inside rSNPs	diseases
2	nsv1062014	chr18:12687210-13183383	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv543655	chr18:12687210-13183383	Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
4	nsv1064844	chr18:12748045-12953235	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
5	nsv543656	chr18:12748045-12953235	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
6	nsv909407	chr18:12877060-12917703	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:12885200-12890600	Weak transcription	Placenta	Placenta
2	chr18:12885200-12893000	Weak transcription	Fetal Lung	lung
3	chr18:12885600-12893600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr18:12885800-12890600	Weak transcription	Stomach Mucosa	stomach
5	chr18:12886600-12891000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr18:12887000-12890800	Weak transcription	HepG2	liver
7	chr18:12890000-12891200	ZNF genes & repeats	Fetal Thymus	thymus
8	chr18:12890200-12890400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr18:12890200-12890400	Enhancers	Hela-S3	cervix
10	chr18:12890200-12890800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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