The 2.0 version of rSNPBase

Variant report

Variant rs9954778
Chromosome Location chr18:12879308-12879309
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:93 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:12844200-12879800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr18:12857800-12881600 Weak transcription Fetal Stomach stomach
3 chr18:12863200-12879800 Weak transcription Hela-S3 cervix
4 chr18:12863200-12880200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr18:12863400-12879800 Weak transcription NHEK skin
6 chr18:12863400-12881400 Weak transcription Right Atrium heart
7 chr18:12863600-12880000 Weak transcription Esophagus oesophagus
8 chr18:12863600-12882000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr18:12863800-12880000 Weak transcription Small Intestine intestine
10 chr18:12863800-12880200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr18:12864400-12880000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr18:12865000-12881800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
13 chr18:12865200-12879800 Weak transcription Fetal Lung lung
14 chr18:12865800-12883000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr18:12869000-12879400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
16 chr18:12872400-12881600 Weak transcription Ovary ovary
17 chr18:12873400-12879800 Weak transcription Primary hematopoietic stem cells blood
18 chr18:12874200-12879600 Weak transcription Primary hematopoietic stem cells short term culture blood
19 chr18:12874400-12880200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
20 chr18:12875600-12882800 Enhancers Primary B cells from peripheral blood blood
21 chr18:12875800-12879800 Weak transcription HUES64 Cell Line embryonic stem cell
22 chr18:12875800-12879800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr18:12875800-12879800 Weak transcription Brain Angular Gyrus brain
24 chr18:12875800-12882000 Weak transcription HSMM muscle
25 chr18:12876000-12879600 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr18:12876000-12882000 Weak transcription Fetal Intestine Large intestine
27 chr18:12876200-12879800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr18:12876200-12880000 Weak transcription H9 Cell Line embryonic stem cell
29 chr18:12876400-12881200 Weak transcription Fetal Muscle Leg muscle
30 chr18:12876600-12880000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr18:12877200-12879800 Weak transcription HUES6 Cell Line embryonic stem cell
32 chr18:12877200-12879800 Enhancers Thymus Thymus
33 chr18:12877400-12881600 Weak transcription Fetal Intestine Small intestine
34 chr18:12877600-12879600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr18:12877600-12881600 Weak transcription Right Ventricle heart
36 chr18:12877600-12882200 Weak transcription Fetal Heart heart
37 chr18:12877800-12882400 Enhancers Primary Natural Killer cells fromperipheralblood blood
38 chr18:12878000-12882600 Enhancers Primary T helper cells fromperipheralblood blood
39 chr18:12878200-12882400 Enhancers Primary T cells fromperipheralblood blood
40 chr18:12878400-12879600 Enhancers Monocytes-CD14+_RO01746 blood
41 chr18:12878400-12882000 Enhancers HepG2 liver
42 chr18:12878600-12879600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
43 chr18:12878600-12880000 Enhancers Breast Myoepithelial Primary Cells Breast
44 chr18:12878600-12880000 Enhancers Primary T helper cells PMA-I stimulated --
45 chr18:12878600-12881200 Enhancers Spleen Spleen
46 chr18:12878600-12881400 Enhancers Primary T helper 17 cells PMA-I stimulated --
47 chr18:12878600-12882600 Enhancers Primary T regulatory cells fromperipheralblood blood
48 chr18:12878600-12882600 Enhancers Duodenum Mucosa Duodenum
49 chr18:12878600-12882800 Enhancers Primary monocytes fromperipheralblood blood
50 chr18:12878600-12882800 Enhancers Primary mononuclear cells fromperipheralblood Blood

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Last update: Aug 31, 2015