Variant report

Variant	rs563858820
Chromosome Location	chr9:72586849-72586850
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72586588..72587213-chr9:72844309..72845161,2	MCF-7	breast:
2	chr9:72586559..72587592-chr9:72844298..72845151,6	K562	blood:
3	chr9:72586580..72588000-chr9:72728026..72728995,9	MCF-7	breast:
4	chr9:72586526..72587567-chr9:72725652..72726529,9	MCF-7	breast:
5	chr9:72586536..72587505-chr9:72725613..72726553,4	K562	blood:
6	chr9:72579585..72583057-chr9:72584421..72588172,5	K562	blood:
7	chr9:72586692..72587617-chr9:72725591..72726665,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204706	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72580400-72590600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:72580600-72591000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:72584200-72591000	Weak transcription	Esophagus	oesophagus
4	chr9:72584400-72587200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:72585200-72587000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:72585200-72589800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:72585400-72587000	Enhancers	HSMMtube	muscle
8	chr9:72585600-72587200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:72585800-72587200	Enhancers	NH-A	brain
10	chr9:72585800-72590400	Weak transcription	HUVEC	blood vessel
11	chr9:72585800-72590800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:72586400-72587000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr9:72586400-72587000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:72586400-72587000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr9:72586400-72587200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:72586400-72587200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:72586400-72587200	Enhancers	NHLF	lung
18	chr9:72586600-72587000	Enhancers	H9 Cell Line	embryonic stem cell
19	chr9:72586600-72587000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr9:72586600-72587000	Enhancers	Placenta	Placenta
21	chr9:72586600-72587000	Enhancers	Placenta Amnion	Placenta Amnion
22	chr9:72586600-72587000	Active TSS	Stomach Smooth Muscle	stomach
23	chr9:72586600-72587000	Flanking Active TSS	NHDF-Ad	bronchial
24	chr9:72586600-72587000	Flanking Active TSS	Osteobl	bone
25	chr9:72586600-72587200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:72586600-72587200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:72586600-72587200	Enhancers	Fetal Muscle Leg	muscle
28	chr9:72586600-72587200	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr9:72586600-72587200	Enhancers	Rectal Smooth Muscle	rectum
30	chr9:72586600-72587400	Enhancers	HMEC	breast
31	chr9:72586600-72587600	Enhancers	HSMM	muscle
32	chr9:72586600-72588000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr9:72586600-72588200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:72586800-72587000	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr9:72586800-72587200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:72586800-72587200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr9:72586800-72587200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:72586800-72587200	Flanking Active TSS	Colon Smooth Muscle	Colon
39	chr9:72586800-72587200	Enhancers	Ovary	ovary
40	chr9:72586800-72587200	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr9:72586800-72587200	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr9:72586800-72587400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr9:72586800-72587400	Enhancers	NHEK	skin

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