Variant report

Variant	rs563861158
Chromosome Location	chr10:42355985-42355986
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3336598	chr10:42354936-42422444	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3350084	chr10:42354936-42422444	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3342799	chr10:42354936-42422544	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1003224	chr10:42354975-42392945	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv14242	chr10:42354975-42396556	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv820572	chr10:42354975-42398230	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv4487	chr10:42355008-42382881	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
8	esv7049	chr10:42355088-42382895	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
9	esv7235	chr10:42355383-42380289	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
10	esv3331946	chr10:42355702-42380334	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
11	esv3395318	chr10:42355877-42356207	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42354800-42366400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:42354800-42367200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr10:42354800-42367200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr10:42354800-42367200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
5	chr10:42354800-42367400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr10:42354800-42367400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr10:42354800-42367400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr10:42354800-42367400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr10:42354800-42368000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:42354800-42368000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr10:42355000-42356400	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
12	chr10:42355000-42356400	ZNF genes & repeats	NHDF-Ad	bronchial
13	chr10:42355000-42356400	ZNF genes & repeats	NHEK	skin
14	chr10:42355000-42356800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
15	chr10:42355000-42357800	ZNF genes & repeats	Gastric	stomach
16	chr10:42355000-42358800	ZNF genes & repeats	Fetal Brain Female	brain
17	chr10:42355000-42359200	ZNF genes & repeats	Brain Germinal Matrix	brain
18	chr10:42355000-42360400	ZNF genes & repeats	NHLF	lung
19	chr10:42355000-42362800	ZNF genes & repeats	Psoas Muscle	Psoas
20	chr10:42355000-42365400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
21	chr10:42355000-42365400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:42355000-42365400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
23	chr10:42355000-42365600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
24	chr10:42355000-42365600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
25	chr10:42355000-42365600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:42355000-42365600	ZNF genes & repeats	Primary B cells from cord blood	blood
27	chr10:42355000-42365600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
28	chr10:42355000-42365600	ZNF genes & repeats	Aorta	Aorta
29	chr10:42355000-42365600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
30	chr10:42355000-42365600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
31	chr10:42355000-42365600	ZNF genes & repeats	Stomach Mucosa	stomach
32	chr10:42355000-42365600	ZNF genes & repeats	GM12878-XiMat	blood
33	chr10:42355000-42365600	ZNF genes & repeats	HepG2	liver
34	chr10:42355000-42365600	ZNF genes & repeats	HSMMtube	muscle
35	chr10:42355000-42365600	ZNF genes & repeats	HUVEC	blood vessel
36	chr10:42355000-42365800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr10:42355000-42365800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
38	chr10:42355000-42365800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:42355000-42365800	ZNF genes & repeats	Fetal Heart	heart
40	chr10:42355000-42365800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
41	chr10:42355000-42365800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
42	chr10:42355000-42365800	ZNF genes & repeats	K562	blood
43	chr10:42355000-42365800	ZNF genes & repeats	NH-A	brain
44	chr10:42355000-42366000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:42355000-42366000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:42355000-42366000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:42355000-42366000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
48	chr10:42355000-42366000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
49	chr10:42355000-42366000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
50	chr10:42355000-42366000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood

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