Variant report

Variant	rs563861402
Chromosome Location	chr9:85043151-85043152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:15)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:85043097-85043223	GM12878	blood:	n/a	n/a

No data

No data

(count:15 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM75D1-3	chr9:85043114-85043202	ENSG00000228430
2	lnc-FAM75D1-4	chr9:85043114-85043202	NONHSAT132704
3	lnc-FAM75D1-4	chr9:85043114-85043208	ENSG00000228430.4
4	lnc-FAM75D1-4	chr9:85043114-85043208	ENSG00000228430.4
5	lnc-FAM75D1-4	chr9:85043114-85043208	ENSG00000228430.4
6	lnc-FAM75D1-4	chr9:85043114-85043208	ENSG00000228430.4
7	lnc-FAM75D1-4	chr9:85043114-85043208	ENSG00000228430.4
8	lnc-FAM75D1-4	chr9:85043114-85043208	ENSG00000228430.4
9	lnc-FAM75D1-4	chr9:85043114-85043208	ENSG00000228430.4
10	lnc-FAM75D1-4	chr9:85043114-85043208	ENSG00000228430.4
11	lnc-FAM75D1-4	chr9:85043114-85043208	ENSG00000228430.4
12	lnc-FAM75D1-4	chr9:85043114-85043395	ENSG00000228430.4
13	lnc-FAM75D1-4	chr9:85043114-85043208	ENSG00000228430.4
14	lnc-FAM75D1-4	chr9:85043114-85043208	ENSG00000228430.4
15	lnc-FAM75D1-4	chr9:85043114-85043202	ENSG00000228430.4

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893508	chr9:84954592-85080395	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893509	chr9:84954592-85097651	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv982311	chr9:85041031-85052919	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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