Variant report

Variant	rs56386345
Chromosome Location	chr5:95490682-95490683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs58041456	0.86[AFR][1000 genomes]
rs60867883	0.86[AFR][1000 genomes]
rs73771892	0.85[AFR][1000 genomes]
rs73771896	0.85[AFR][1000 genomes]
rs73771900	0.85[AFR][1000 genomes]
rs73771902	0.85[AFR][1000 genomes]
rs73773903	0.85[AFR][1000 genomes]
rs73773904	0.95[AFR][1000 genomes]
rs73773905	0.95[AFR][1000 genomes]
rs73773907	0.95[AFR][1000 genomes]
rs73773908	0.95[AFR][1000 genomes]
rs73773909	0.95[AFR][1000 genomes]
rs73773910	0.90[AFR][1000 genomes]
rs73773911	0.95[AFR][1000 genomes]
rs73773912	0.90[AFR][1000 genomes]
rs73773913	0.86[AFR][1000 genomes]
rs73773915	0.86[AFR][1000 genomes]
rs73773916	0.86[AFR][1000 genomes]
rs73773917	0.91[AFR][1000 genomes]
rs73773919	1.00[AFR][1000 genomes]
rs73773920	0.95[AFR][1000 genomes]
rs73773921	0.95[AFR][1000 genomes]
rs73773922	1.00[AFR][1000 genomes]
rs73773923	1.00[AFR][1000 genomes]
rs73773925	1.00[AFR][1000 genomes]
rs73773926	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758003	chr5:95231706-95540433	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	esv2759355	chr5:95231706-95540433	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	esv2757121	chr5:95304236-95539536	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
5	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
6	nsv882390	chr5:95486940-95591580	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1035022	chr5:95487901-95526796	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95478200-95493200	Weak transcription	Gastric	stomach
2	chr5:95480200-95491000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:95482200-95491800	Weak transcription	Fetal Intestine Large	intestine
4	chr5:95482600-95494800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:95482800-95494800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:95486400-95493400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:95486400-95494600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:95486400-95495000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:95486600-95491000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:95486600-95493200	Weak transcription	A549	lung
11	chr5:95486800-95491000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:95486800-95491400	Weak transcription	Esophagus	oesophagus
13	chr5:95486800-95506400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr5:95489200-95493200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:95490400-95491200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr5:95490400-95491800	Enhancers	NHEK	skin
17	chr5:95490400-95495000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:95490600-95491800	Enhancers	HMEC	breast
19	chr5:95490600-95492400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:95490600-95494200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr5:95490600-95495000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links