Variant report

Variant	rs73773909
Chromosome Location	chr5:95477666-95477667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95471926..95474229-chr5:95474959..95477676,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs56386345	0.95[AFR][1000 genomes]
rs57715563	1.00[AMR][1000 genomes]
rs58041456	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60867883	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61489794	1.00[AMR][1000 genomes]
rs73771890	1.00[AMR][1000 genomes]
rs73771892	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771896	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771900	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771902	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773903	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773910	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773912	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773913	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773915	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773916	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773917	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773919	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773920	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773921	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773922	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773923	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773925	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773926	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758003	chr5:95231706-95540433	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	esv2759355	chr5:95231706-95540433	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	esv2757121	chr5:95304236-95539536	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
5	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95461600-95482000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:95470400-95482000	Weak transcription	HSMM	muscle
3	chr5:95470400-95485800	Weak transcription	HSMMtube	muscle
4	chr5:95475600-95478600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:95475800-95478400	Weak transcription	Stomach Mucosa	stomach
6	chr5:95476200-95482200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:95476400-95478400	Weak transcription	Adipose Nuclei	Adipose
8	chr5:95476400-95478600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:95476600-95479000	Weak transcription	Pancreas	Pancrea
10	chr5:95476600-95483800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:95477200-95478200	Enhancers	Gastric	stomach
12	chr5:95477200-95479600	Enhancers	HepG2	liver
13	chr5:95477200-95479800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:95477200-95480200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr5:95477200-95480400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:95477400-95478800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:95477400-95479600	Enhancers	HMEC	breast
18	chr5:95477400-95480600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:95477400-95481600	Weak transcription	Left Ventricle	heart
20	chr5:95477600-95479200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:95477600-95479400	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links