Variant report

Variant	rs563869954
Chromosome Location	chr17:15451061-15451062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr17:15450690-15451105	HepG2	liver:	n/a	chr17:15450935-15450950

Variant related genes	Relation type
TVP23C	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1055677	chr17:15294011-15561130	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv1058286	chr17:15315763-15561130	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv543213	chr17:15315763-15561130	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv960418	chr17:15441505-15470653	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3395445	chr17:15444877-15459575	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv457695	chr17:15447364-15611495	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	nsv574462	chr17:15447364-15611495	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	esv3434152	chr17:15450327-15455625	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv3508601	chr17:15450327-15459525	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3508602	chr17:15450327-15459525	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15383400-15455000	Weak transcription	Gastric	stomach
2	chr17:15393400-15451200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr17:15416200-15466000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr17:15417600-15466400	Weak transcription	Ovary	ovary
5	chr17:15420400-15452800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr17:15420600-15459600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr17:15421200-15453000	Weak transcription	Aorta	Aorta
8	chr17:15421800-15465600	Weak transcription	Hela-S3	cervix
9	chr17:15422800-15465800	Weak transcription	Fetal Intestine Small	intestine
10	chr17:15429800-15466000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr17:15429800-15466400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr17:15431000-15465400	Weak transcription	K562	blood
13	chr17:15439000-15466000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr17:15439600-15456000	Weak transcription	Colon Smooth Muscle	Colon
15	chr17:15439600-15466000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr17:15439800-15466400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr17:15440200-15466400	Weak transcription	Left Ventricle	heart
18	chr17:15440800-15466000	Weak transcription	NHEK	skin
19	chr17:15441000-15466000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr17:15442600-15465400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr17:15442600-15466000	Weak transcription	A549	lung
22	chr17:15442600-15466400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr17:15442800-15462600	Weak transcription	Thymus	Thymus
24	chr17:15442800-15465800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr17:15442800-15466400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr17:15442800-15466400	Weak transcription	Lung	lung
27	chr17:15444200-15452200	Weak transcription	GM12878-XiMat	blood
28	chr17:15444200-15452400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr17:15444400-15451400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr17:15445200-15462000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr17:15447200-15453000	Weak transcription	Esophagus	oesophagus
32	chr17:15447200-15465200	Weak transcription	HUVEC	blood vessel
33	chr17:15448000-15451200	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr17:15449000-15453000	Weak transcription	Fetal Intestine Large	intestine
35	chr17:15449000-15455000	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr17:15449000-15465200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr17:15449000-15466000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr17:15449000-15466000	Weak transcription	Brain Anterior Caudate	brain
39	chr17:15449000-15466000	Weak transcription	HSMMtube	muscle
40	chr17:15449200-15452200	Weak transcription	Brain Substantia Nigra	brain
41	chr17:15449200-15454600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr17:15449200-15454800	Weak transcription	Fetal Muscle Leg	muscle
43	chr17:15449200-15459200	Weak transcription	Duodenum Mucosa	Duodenum
44	chr17:15449200-15465400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr17:15449200-15466000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr17:15449200-15466000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr17:15449200-15466000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr17:15449200-15466000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr17:15449200-15466000	Weak transcription	NH-A	brain
50	chr17:15449400-15451200	Weak transcription	Adipose Nuclei	Adipose

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