Variant report

Variant	rs56389699
Chromosome Location	chr4:56936509-56936510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10517368	0.93[ASN][1000 genomes]
rs11732604	0.81[ASN][1000 genomes]
rs11735331	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3437596	chr4:56934495-56938693	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56923800-56936800	Weak transcription	Fetal Intestine Large	intestine
2	chr4:56927200-56939800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:56931200-56943600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:56934200-56937600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:56935000-56938600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr4:56935400-56936800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:56935400-56942800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:56935400-56945000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:56935800-56942800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:56936000-56937400	Weak transcription	Fetal Brain Female	brain
11	chr4:56936000-56943800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:56936200-56936800	Enhancers	Placenta	Placenta
13	chr4:56936200-56937200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:56936400-56936800	Enhancers	K562	blood
15	chr4:56936400-56937200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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