Variant report

Variant	rs11732604
Chromosome Location	chr4:56930756-56930757
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10008254	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs10013329	1.00[JPT][hapmap]
rs10030394	0.94[EUR][1000 genomes]
rs10517368	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11735331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17086122	1.00[JPT][hapmap]
rs2412729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2611815	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2611816	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2702331	1.00[JPT][hapmap]
rs2702348	1.00[JPT][hapmap]
rs56389699	0.81[ASN][1000 genomes]
rs719007	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56916400-56936200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:56916600-56931600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:56916600-56934200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:56917200-56934600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:56922000-56934200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:56922000-56934400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:56922000-56935600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:56922200-56934000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:56922200-56935000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:56922800-56934000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:56922800-56934200	Weak transcription	Fetal Stomach	stomach
12	chr4:56922800-56934800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:56923800-56936400	Weak transcription	Fetal Intestine Small	intestine
14	chr4:56923800-56936800	Weak transcription	Fetal Intestine Large	intestine
15	chr4:56925200-56932800	Weak transcription	Brain Germinal Matrix	brain
16	chr4:56925200-56933400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:56926800-56936200	Weak transcription	Fetal Kidney	kidney
18	chr4:56927200-56939800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr4:56928600-56931200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:56929600-56933800	Weak transcription	Placenta	Placenta
21	chr4:56929800-56934800	Weak transcription	Fetal Brain Female	brain
22	chr4:56930000-56934000	Weak transcription	HepG2	liver
23	chr4:56930000-56935000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr4:56930600-56934200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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